Job Description P17411 Confidence 100.00% Date Thu Jan 5 11:36:08 GMT 2012 Rank 36 Aligned Residues 302 % Identity 16% Template c1hygA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:l-lactate/malate dehydrogenase; PDBTitle: crystal structure of mj0490 gene product, the family of2 lactate/malate dehydrogenase Resolution 2.80 Å

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		5	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure										.																																																									.
Query SS confidence										.																																																									.
Query Sequence		L	K	V	V	T	I	G	G	.	G	S	S	Y	T	P	E	L	L	E	G	F	I	K	R	Y	H	E	L	P	V	S	E	L	W	L	V	D	V	E	G	G	K	P	K	L	D	I	I	F	D	L	C	Q	R	M	I	D	N	A	G	V	P	M	K	L	.	Y	K	T	L	D	R	R	E	A	L	K	D	A	D
Query Conservation										.																																																									.
Alig confidence										.																			.	.	.	.																																			.
Template Conservation																													.	.	.	.
Template Sequence		M	K	V	T	I	I	G	A	S	G	R	V	G	S	A	T	A	L	L	L	A	K	E	P	F	M	K	.	.	.	.	D	L	V	L	I	G	R	E	H	S	I	N	K	L	E	G	L	R	E	D	I	Y	D	A	L	A	G	T	R	S	D	A	N	I	Y	V	E	S	D	E	N	L	R	I	I	D	E	S	D
Template Known Secondary structure								T	T	T	S													S	T	T			.	.	.	.								G	G	G																T	T	S											T	T		G	G	G	G	T	T		S
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	T	T	Q	L	R	V	G	Q	L	P	A	R	E	L	D	E	R	I	P	L	S	H	G	Y	L	G	Q	E	T	N	G	A	G	G	L	F	K	G	L	R	T	I	P	V	I	F	D	I	V	K	D	V	E	E	L	C	P	N	A	W	V	I	N	F	T	N	P	A	G	M	V	T	E	A	V	Y	R	H
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		V	V	I	I	T	S	G	V	P	R	K	E	G	M	S	R	M	D	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	N	A	K	I	V	G	K	Y	A	K	K	I	A	E	I	C	D	T	K	I	F	V	.	I	T	N	P	V	D	V	M	T	Y	K	A	L	V	D
Template Known Secondary structure													S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.		S	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.																					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	F	K	R	F	I	G	V	C	N	I	P	I	G	M	K	M	F	I	R	D	V	L	M	L	K	D	S	D	D	L	S	I	D	L	F	G	L	N	H	M	V	F	I	K	D	V	L	I	N	G	K	S	R	F	A	E	L	L	D	G	V	A	S	G	Q	L	K	A	S	S	V	K	N	I	F	D	L	P
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	F	E	R	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	V	F	G	L	G	T	H	L	D	S	L	R	F	K	V	A	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	F	G	V	H	I	D	E	V	R	T	R	I	I	G	E	H	G	D	S	M
Template Known Secondary structure			T			T	.	.	.	.	.	.	.	.	.	.	.	.	T	T					T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T			G	G	G							B		S	S	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140													.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160																						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		F	S	E	G	L	I	R	S	L	N	L	L	P	C	S	Y	L	L	Y	Y	F	K	Q	K	E	M	L	A	I	E	M	G	E	Y	Y	K	G	G	A	R	A	Q	V	V	Q	K	V	E	K	Q	L	F	E	L	Y	K	N	P	E	L	K	V	K	P	K	E	L	E	Q	R	G	G	A	Y	Y	S	.	.	D	A
Query Conservation																																																																														.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	L	L	S	A	T	S	I	G	G	I	P	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	F	E	R	F	K	E	L	P	I	D	E	I	I	E	D	V	K	T	K	G	E	Q	I	I	R	L	K	G	G	S	E	F	G	P	A	A	A
Template Known Secondary structure					G	G	G				T	T			G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G		G	G	G	G	G												T		T					T	T	S	S	S		S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.																												.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	E	V	I	N	A	I	Y	N	D	K	Q	A	E	H	Y	V	N	I	P	H	H	G	Q	I	D	N	I	P	A	D	W	A	V	E	M	T	C	K	L	G	R	D	G	A	T	P	H	P	R	I	T	H	F	D	D	K	V	M	G	L	I	H	T	I	K	G	F	E	I	A
Query Conservation
Alig confidence																											.
Template Conservation																											.
Template Sequence		I	L	N	V	V	R	C	I	V	N	N	E	K	R	L	L	T	L	S	A	Y	V	D	G	E	.	F	D	G	I	R	D	V	C	I	G	V	P	V	K	I	G	R	D	G	I	E	E	V	V	S	I	E	L	D	K	D	E	I	I	A	F	R	K	S	A	E	I	I	K	K	Y
Template Known Secondary structure											T	T			B									S	S	S	.	B	T	T	B		S											T	T
Template Predicted Secondary structure																											.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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