Job Description P0ADY1 Confidence 100.00% Date Thu Jan 5 11:22:05 GMT 2012 Rank 4 Aligned Residues 245 % Identity 16% Template c3rgcB_ PDB info PDB header:chaperone Chain: B: PDB Molecule:possible periplasmic protein; PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally related sura-like chaperones in the human pathogen3 campylobacter jejuni Resolution 2.30 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	Y	A	A	K	V	N	D	Q	E	I	S	R	G	Q	F	E	N	A	F	N	S	E	R	N	R	M	Q	Q	Q	L	G	D	Q	Y	S	E	L	A	A	N	E	G	Y	M	K	T	L	R	Q	Q	V	L	N	R	L	I	D	E	A	L	L	D	Q	Y	A	R	E	L	K	L	G	I	S	D	E	Q	V	K
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	I	A	V	V	V	D	K	E	P	I	T	T	Y	D	I	D	Q	T	M	K	A	L	K	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	K	A	L	G	V	L	I	N	E	K	M	E	I	S	Q	M	K	Q	L	G	I	V	V	N	D	L	E	L	D
Template Known Secondary structure									T	T															S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.																							.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	I	F	A	T	P	A	F	Q	V	D	G	K	F	D	N	S	R	Y	N	G	I	L	N	Q	M	G	M	T	A	D	Q	Y	A	Q	A	L	R	N	Q	L	T	T	Q	Q	L	I	N	G	V	A	G	T	D	F	M	L	K	G	E	T	D	E	L	A	A	L	V	A	Q	Q	R	V	V	R	E	A	T	I
Query Conservation
Alig confidence										.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	I	N	K	M	L	A	.	.	.	Q	N	K	T	T	L	N	A	F	K	A	N	L	K	S	K	N	Q	S	Y	E	Q	F	R	T	N	F	K	K	D	L	E	K	R	K	L	Y	E	K	I	A	S	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										.	.	.		T	T													T	T																									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.				.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	N	A	L	A	A	K	Q	P	V	T	E	Q	E	I	A	S	Y	Y	E	Q	N	K	N	N	F	M	T	P	E	Q	F	R	V	S	Y	I	K	L	D	A	A	T	M	Q	Q	P	V	S	D	A	D	I	Q	S	Y	Y	D	Q	H	Q	D	Q	F	T	Q	P	Q	R	T	R	Y	S	I	I	Q	T	K	T
Query Conservation
Alig confidence		.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	A	K	T	D	F	S	D	D	G	A	K	K	F	F	E	Q	N	K	D	K	F	T	F	Y	T	Q	I	N	A	N	I	Y	L	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	S																	G	G	G	G				S										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		E	D	E	A	K	A	V	L	D	E	L	N	K	G	G	D	F	A	A	L	A	K	E	K	S	A	D	I	I	S	A	R	N	G	G	D	M	G	W	L	E	D	A	T	I	P	D	E	L	K	N	A	G	L	.	K	E	K	G	Q	L	S	G	V	I	K	S	S	V	G	F	L	I	V	R	L	D	D	I	Q
Query Conservation																																																								.
Alig confidence		.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation		.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	N	P	Q	T	L	E	N	I	K	N	T	K	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	K	P	Q	N	A	S	L	N	T	S	N	A	D	P	R	L	L	G	L	L	S	Q	I	P	V	G	S	F	S	P	V	L	N	G	K	N	G	Y	E	L	Y	E	V	K	S	K	D
Template Known Secondary structure		.	.	.											.				.	.	.	.	.	.	.	.	.	.	.	.	.	.		S									T	T	T	S											S		T	T									S	S	S					.
Template Predicted Secondary structure		.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					165	.	.	.	.	170	.	.	.	.	.	.	.	.															.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	K	V	K	S	L	D	E	V	R	D	D	I	A	A	K	V	K	H	E	K	A	L	D	A	Y	Y	A	L	Q	Q	K	V	S	D	A	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	Q	T	P	E	Y	E	Q	V	K	N	E	V	L	N	A	Y	V	S	E	Q	R	Q	N	F	I	Q	D	Y	F	D	K	L	R	S	K	I	N
Template Known Secondary structure		S						S	S	S	S																												S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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