Job Description P0ADY1 Confidence 100.00% Date Thu Jan 5 11:22:05 GMT 2012 Rank 5 Aligned Residues 240 % Identity 26% Template c3rfwA_ PDB info PDB header:chaperone Chain: A: PDB Molecule:cell-binding factor 2; PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally-related sura-like chaperones in the human pathogen3 campylobacter jejuni Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	A	A	K	V	N	D	Q	E	I	S	R	G	Q	F	E	N	A	F	N	S	E	R	N	R	M	Q	Q	Q	L	G	D	Q	Y	S	E	L	A	A	N	E	G	Y	M	K	T	L	R	Q	Q	V	L	N	R	L	I	D	E	A	L	L	D	Q	Y	A	R	E	L	K	L	G	I	S	D	E	Q	V	K	Q
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	V	A	T	V	N	G	K	S	I	S	D	T	E	V	S	E	F	F	A	P	M	.	.	.	.	.	.	.	.	.	.	.	.	L	R	G	Q	D	F	K	T	L	P	D	N	Q	K	K	A	L	I	Q	Q	Y	I	M	Q	D	L	I	L	Q	D	A	K	K	Q	N	L	E	K	D	P	L	Y	T	K	E
Template Known Secondary structure								T	T																.	.	.	.	.	.	.	.	.	.	.	.		T	T			G	G	G	S																									T	T	G	G	G	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.													.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	F	A	T	P	A	F	Q	V	D	G	K	F	D	N	S	R	Y	N	G	I	L	N	Q	M	G	M	T	A	D	Q	Y	A	Q	A	L	R	N	Q	L	T	T	Q	Q	L	I	N	G	V	A	G	T	D	F	M	L	K	G	E	T	D	E	L	A	A	L	V	A	Q	Q	R	V	V	R	E	A	T	I	D
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	A	K	D	A	I	L	V	N	V	Y	Q	E	K	I	L	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90																																		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	A	L	A	A	K	Q	P	V	T	E	Q	E	I	A	S	Y	Y	E	Q	N	K	N	N	F	M	T	P	E	Q	F	R	V	S	Y	I	K	L	D	A	A	T	M	Q	Q	P	V	S	D	A	D	I	Q	S	Y	Y	D	Q	H	Q	D	Q	F	T	Q	P	Q	R	T	R	Y	S	I	I	Q	T	K	T	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	I	K	I	D	A	A	K	V	K	A	F	Y	D	Q	N	K	D	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	P	A	R	V	Q	A	K	H	I	L	V	A	T	E
Template Known Secondary structure		.	.	.	.	.	.	.																G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																																							.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		280	.	.	.	.	.	.	.	.	.							290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure												.	.	.	.	.	.																																												.									.
Query SS confidence												.	.	.	.	.	.																																												.									.
Query Sequence		D	E	A	K	A	V	L	D	E	L	.	.	.	.	.	.	N	K	G	G	D	F	A	A	L	A	K	E	K	S	A	D	I	I	S	A	R	N	G	G	D	M	G	W	L	E	D	A	T	I	P	D	E	L	K	N	A	G	L	.	K	E	K	G	Q	L	S	G	.	V	I	K	S	S	V	G	F	L	I	V
Query Conservation												.	.	.	.	.	.																																												.									.
Alig confidence												.	.	.	.	.	.																																												.									.
Template Conservation
Template Sequence		K	E	A	K	D	I	I	N	E	L	K	G	L	K	G	K	E	L	D	A	K	F	S	E	L	A	K	E	K	S	I	D	P	G	S	K	N	Q	G	G	E	L	G	W	F	D	Q	S	T	M	V	K	P	F	T	D	A	A	F	A	L	K	N	G	T	I	T	T	T	P	V	K	T	N	F	G	Y	H	V	I
Template Known Secondary structure												T	T																					T	T	T	G	G	G	T	T							S	S	S	S											S		T	T				S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	D	D	I	Q	P	A	K	V	K	S	L	D	E	V	R	D	D	I	A	A	K	V	K	H	E	K	A	L	D	A	Y	Y	A	L	Q	Q	K	V	S	D	A	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	E	N	S	Q	A	K	G	Q	I	K	F	D	E	V	K	Q	G	I	E	N	G	L	K	F	E	E	F	K	K	V	I	N	Q	K	G	Q	D	L	L	N	S	A	K
Template Known Secondary structure																																													S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions