Job Description P0A715 Confidence 92.28% Date Thu Jan 5 11:04:29 GMT 2012 Rank 185 Aligned Residues 209 % Identity 14% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.												.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	L	F	G	G	M	N	V	L	E	S	R	D	L	A	M	R	I	C	E	H	Y	V	T	V	T	Q	K	L	G	I	P	Y	V	F	K	A	.	.	.	.	.	.	.	.	.	.	.	S	F	D	K	A	N	R	S	S	I	H	S	Y	R	G	P	G	L	E	E	G	M	K	I	F	Q	E	L	K	Q	T
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.				.	.																							.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation								.	.	.	.	.				.	.																																													.	.
Template Sequence		P	F	V	T	I	G	.	.	.	.	.	D	P	N	.	.	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	.	.	A	K	T	T	P	D	I	C	F	E	L	I	A	Q	I	R	A	R
Template Known Secondary structure						T	T	.	.	.	.	.	S	S		.	.														T	T		S	S										T	T																.	.	T	T
Template Predicted Secondary structure								.	.	.	.	.				.	.																																													.	.
Template SS confidence
		21	.	.	.	.	.						.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
			88	.	90	.	.	.	.	.	.	.									.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure		.											.	.	.	.	.	.	.	.												.												.
Query SS confidence		.											.	.	.	.	.	.	.	.												.												.
Query Sequence		.	F	G	V	K	I	I	T	D	V	H	.	.	.	.	.	.	.	.	E	P	S	Q	A	Q	P	V	A	D	V	.	V	D	V	I	Q	L	P	A	F	L	A	.	R	Q	T	D	L	V	E	A	M	A	K	T	G	A	V	I	N	V	K	K	P	Q	F	V	S	P	G	Q	M	G	N	I	V	D	K	F	K
Query Conservation		.											.	.	.	.	.	.	.	.												.												.
Alig confidence		.											.	.	.	.	.	.	.	.												.												.																																			.	.
Template Conservation																																																																															.	.
Template Sequence		N	P	E	T	P	I	G	L	L	M	Y	A	N	L	V	Y	A	R	G	I	D	D	F	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	A	D	V	P	T	N	E	S	Q	P	F	V	A	A	A	E	K	F	G	I	Q	P	I	F	I	A	P	P	T	A	S	D	E	T	L	R	A	V	A	Q	.	.	L
Template Known Secondary structure			T	T	S													T	T													T							T	T	S		G	G	G											T	T									T	T			S									.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	G	N	E	K	V	I	L	C	D	R	G	A	N	F	G	Y	D	N	L	V	V	D	M	L	G	F	S	I	M	K	K	V	S	G	N	S	P	V	I	F	D	V	T	H	A	L	Q	C	R	D	P	F	G	A	A	S	G	G	R	R	A	Q	V	A	E	L	A	R	A	G	M	A	V	G	L	A	G	L
Query Conservation
Alig confidence						.	.	.	.	.											.	.	.	.	.	.											.							.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.											.	.	.	.	.	.											.							.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Template Sequence		G	K	G	Y	.	.	.	.	.	T	Y	L	L	S	R	A	P	V	H	.	.	.	.	.	.	A	L	L	E	R	L	Q	Q	F	D	.	A	P	P	A	L	L	.	.	.	.	.	.	.	.	.	.	G	F	G	I	S	E	.	.	.	.	.	.	.	P	A	Q	V	K	Q	A	I	E	A	G	A	A	G	A
Template Known Secondary structure				S		.	.	.	.	.											.	.	.	.	.	.									T	T	.							.	.	.	.	.	.	.	.	.	.		S	S			S	.	.	.	.	.	.	.										T	T		S
Template Predicted Secondary structure						.	.	.	.	.											.	.	.	.	.	.											.							.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.						.	.	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.											200	.	.	.	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		237	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		F	I	E	A	H	P	.	.	D	P	E	H	A	K	C	D	G	P	S	A	L	P	L	A	K	L	E	P	F	L	K	Q	M	K	A
Query Conservation								.	.
Alig confidence								.	.													.	.
Template Conservation																						.	.
Template Sequence		I	S	G	S	A	V	V	K	I	I	E	T	H	L	D	N	P	A	K	Q	.	.	L	T	E	L	A	N	F	T	Q	A	M	K	K
Template Known Secondary structure				S	S									T	T	T						.	.
Template Predicted Secondary structure																						.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions