 |
Job Description | P0A715 | Confidence | 90.52% | Date | Thu Jan 5 11:04:29 GMT 2012 |
Rank | 210 | Aligned Residues | 105 |
% Identity | 13% | Template | c3cprB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:dihydrodipicolinate synthetase; |
PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution
|
Resolution | 2.20 Å |
|
 |
  |   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | L | P | F | V | L | F | G | G | M | N | V | L | E | S | R | D | L | A | M | R | I | C | E | H | Y | V | T | V | T | Q | K | L | G | I | P | Y | V | F | K | A | S | F | D | K | A | N | R | S | S | I | H | S | Y | R | G | P | G | L | E | E | G | M | K | I | F | Q | E | L | K | Q | T | F | G | V | K | I | I | T | D |
Query Conservation |   |
  |   |
|   |   |
|
|
|
|
|
|   |   |
|
|   |   |   |   |
|
|   |
|
|   |
|
|   |   |
|   |   |
|
|
|
|   |
|
|   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
  |   |   |   |   |
|
|   |
|
|   |   |   |
|   |   |   | . | . | . | . | . |   |
|   |   |
|   |   |
|   |   |   |
|
|
|   |
|   | . | . | . | . | . | . | . | . |
|   |
|
|   | . |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|   |   |   |
|
| . | . | . |
Template Sequence |   |
G | D | R | A | K | L | I | A | G | V | G | T | N | N | T | R | T | . |
. |
. |
. |
. |
S | V | E | L | A | E | A | A | A | S | A | G | A | D | G | L | L | . |
. |
. |
. |
. |
. |
. |
. |
V | V | T | P | Y | . |
Y | S | K | P | S | Q | E | G | L | L | A | H | F | G | A | I | A | A | A | T | E | V | P | I | . |
. |
. |
Template Known Secondary structure |   |
T | T | T | S |  |  |  |  |  |
|
|
| S | S |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  | . | . | . | . | . | . | . | . |  |  |
|
|
| . | S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| S |
|  | . | . | . |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . | . | . | . | . | . | . |  |
|
|
|
| . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | 120 | . | |
. | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | |
|
|
  |
  |   |
96 | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |
|
. | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . |
Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  | . | . |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | H | E | P | S | Q | A | Q | P | V | A | D | V | V | D | V | I | Q | L | P | A | F | L | . |
. |
A | R | Q | T | D | L | V | E | A | M | A | K | T | G | A | V | I | N | V | K | K | P | Q | F | V | S | P | G | Q | M | G | N | I | V | D |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|
|
|   |   | . | . |   |   |
|   |
|
|
|   |   |   |
|   |   |
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |
|
|   |   |
|
|   |
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|
|   |
|   |   |
|
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |
|   |
|
|
| . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
C | L | Y | D | I | P | G | R | S | G | I | P | I | E | S | D | T | M | R | R | L | S | E | L | P | T | I | L | A | V | D | . |
. |
A | K | G | D | L | V | A | A | T | S | L | I | K |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|  |  |  |  | S | S |
|
|
|  |  |  |  |  |  |  | T | T | S | T | T |  |  |  |
|
| . | . |
| S |
|
|  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
146 | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | |
|
. | . | . | 180 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|