Job Description P0A715 Confidence 90.96% Date Thu Jan 5 11:04:29 GMT 2012 Rank 202 Aligned Residues 106 % Identity 15% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.
Predicted Secondary structure																	.	.	.	.	.													.	.	.	.																																					.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.													.	.	.	.																																					.	.	.	.	.	.
Query Sequence		P	A	F	L	A	R	Q	T	D	L	V	E	A	M	A	.	.	.	.	.	K	T	G	A	V	I	N	V	K	K	P	Q	.	.	.	.	F	V	S	P	G	Q	M	G	N	I	V	D	K	F	K	E	G	G	N	E	K	V	I	L	C	D	R	G	A	N	F	G	Y	D	N	L	.	.	.	.	.	.	V	V
Query Conservation																	.	.	.	.	.													.	.	.	.																																					.	.	.	.	.	.
Alig confidence																	.	.	.	.	.													.	.	.	.																																					.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L
Template Known Secondary structure		G	G	G	G	G	G														T	T		S	S								S		B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	L	G	F	S	I	M	K	K	V	S	G	N	S	P	V	I	F	D	V	T	H	A	L	Q	C	R	D	P	F	G	A	A	S	G	G	R	R	A	Q	V	A	E	L	A	R	A	G	M	A	V	G	L	A	G	L	F	I
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	E	A	L	F	H	L	K	.	R	V	D	G	V	X	L
Template Known Secondary structure														T	T	S						S	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	.	T	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																		.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions