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Job DescriptionP0A715
Confidence94.83%DateThu Jan 5 11:04:29 GMT 2012
Rank117Aligned Residues204
% Identity14%Templatec2fptA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:dihydroorotate dehydrogenase, mitochondrial; PDBTitle: dual binding mode of a novel series of dhodh inhibitors
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50... ......60........
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Query Sequence  VSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYV. . . . . . . . . . . . . . . . . FKASFDKANRSSIHS
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Template Sequence  VRVLGHKFR. . NPVGIAAGFDKH. . . . . . . . . . GEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYG
Template Known Secondary structure  TTS..SS
TTTTTT..........SS
TT
S
SS
B

S
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GGGT


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   81........ 90.........100. ........110.........120.........130.........140........
 
   6970.........80... ......90........ .100.........110.... .....120...
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Query Sequence  YRGPGLEEGMKIFQE. . . . . . LKQTFGVKIITDVHE. . . . . . . . . . . PSQAQPVADVVDVIQL. . . . . . . . PAFLARQTD
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Template Sequence  FNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKA
Template Known Secondary structure 

B

TTTT




TT
S
GGG
S


TTSTTSGGGGS
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   149150.........160.........170.........180.........190.........200.........210.........220........
 
   124.... .130.........140.........150.........160.........170.........180
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Query Sequence  LVEAM. . . . . . . . . . . . AKTGAVINVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVD. . . . . . . . . . .
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Template Sequence  ELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKP
Template Known Secondary structure  TS
GGG


S


T




BS


TT


TTTTSSS
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   229230.........240.........250.........260.........270.........280.........290.........300........
 
   181........190.. .......200.........210.........220.........230........
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Query Sequence  . . . . . MLGFSIMKKVSG. NSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFI
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Template Sequence  LRDLSTQTIREMYALTQGRVPIIGVGGVSS. . . . . . . . . . . . . . . . . GQDALEKIRAGASLVQL
Template Known Secondary structure  TTT
S
SS

S.................T
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   309310.........320.........330........ .340.........350.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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