Job Description P0A715 Confidence 96.39% Date Thu Jan 5 11:04:29 GMT 2012 Rank 62 Aligned Residues 207 % Identity 14% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.												.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	V	L	F	G	G	M	N	V	L	E	S	R	D	L	A	M	R	I	C	E	H	Y	V	T	V	T	Q	K	L	G	I	P	Y	V	F	K	A	.	.	.	.	.	.	.	.	.	.	.	S	F	D	K	A	N	R	S	S	I	H	S	Y	R	G	P	G	L	E	E	G	M	K	I	F	Q	E	L	K	Q	T
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.				.	.																							.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation								.	.	.	.	.				.	.																																													.	.
Template Sequence		S	Y	L	M	V	G	.	.	.	.	.	Y	P	D	.	.	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	.	.	N	G	I	R	F	E	D	V	L	E	L	S	E	T	L	R	K	E
Template Known Secondary structure						T	T	.	.	.	.	.	S	S		.	.														T	T		S									S			T	T	S														.	.	T	T
Template Predicted Secondary structure								.	.	.	.	.				.	.																																													.	.
Template SS confidence
		21	.	.	.	.	.						.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		88		.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.										.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure			.				.																												.	.	.	.	.	.	.	.	.
Query SS confidence			.				.																												.	.	.	.	.	.	.	.	.
Query Sequence		F	.	G	V	K	.	I	I	T	D	V	H	E	P	S	Q	A	Q	P	V	A	D	V	V	D	V	I	Q	L	P	A	F	L	.	.	.	.	.	.	.	.	.	A	R	Q	T	D	L	V	E	A	M	A	K	T	G	A	V	I	N	V	K	K	P	Q	F	V	S	P	G	Q	M	G	N	I	V	D	K	F	K
Query Conservation			.				.																												.	.	.	.	.	.	.	.	.
Alig confidence			.				.																												.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation																																																																															.	.
Template Sequence		F	P	D	I	P	F	L	L	M	T	Y	Y	N	P	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	V	P	D	L	P	P	E	E	A	E	E	L	K	A	V	M	K	K	Y	V	L	S	F	V	P	L	G	A	P	T	S	T	R	K	R	I	K	L	I	C	E	.	.	A
Template Known Secondary structure			T	T	S																										T	T							T	T																T	T									T	T												.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	G	N	E	K	V	I	L	C	D	R	G	A	N	F	G	Y	D	N	L	V	V	D	M	L	G	F	S	I	M	K	K	V	S	G	N	S	P	V	I	F	D	V	T	H	A	L	Q	C	R	D	P	F	G	A	A	S	G	G	R	R	A	Q	V	A	E	L	A	R	A	G	M	A	V	G	L	A	G	L
Query Conservation
Alig confidence						.	.	.	.	.														.	.	.											.							.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.														.	.	.											.							.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Template Sequence		A	D	E	M	.	.	.	.	.	T	Y	F	V	S	V	T	G	Y	E	R	I	K	.	.	.	K	K	V	E	E	Y	R	E	L	C	.	D	K	P	V	V	V	.	.	.	.	.	.	.	.	.	.	G	F	G	V	S	K	K	.	.	.	.	.	.	.	.	E	H	A	R	E	I	G	S	F	A	D	G	V
Template Known Secondary structure			S	S		.	.	.	.	.					S	S								.	.	.											.		S					.	.	.	.	.	.	.	.	.	.		S	S			S		.	.	.	.	.	.	.	.								T	T	S	S
Template Predicted Secondary structure						.	.	.	.	.														.	.	.											.							.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.											.	.	.	.	.	.	.									210	.	.	.	.	.	.	.	.	.	220	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	E	A	H	P	D	P	E	H	A	K	C	D	G	P	S	A	L	P	L	A	K	L	E	P	F	L	K	Q	M	K	A
Query Conservation
Alig confidence							.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.
Template Sequence		V	V	G	S	A	.	.	.	.	.	.	L	V	K	L	A	G	Q	K	K	I	E	D	L	G	N	L	V	K	E	L	K	E
Template Known Secondary structure							.	.	.	.	.	.							T	T
Template Predicted Secondary structure							.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.							.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions