Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP64599
DateThu Jan 5 12:09:49 GMT 2012
Unique Job IDadf900f11d8e24fb

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1ikta_
Top template information
Fold:SCP-like
Superfamily:SCP-like
Family:Sterol carrier protein, SCP
Confidence and coverage
Confidence: 99.5% Coverage: 61%
106 residues ( 61% of your sequence) have been modelled with 99.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQALDDGELEFLEGRWLSI
Secondary structure 












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Disorder  ?









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   .........70.........80.........90.........100.........110.........120
Sequence  HVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEG
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Disorder 














?



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????

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?
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   .........130.........140.........150.........160.........170....
Sequence  DTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMKTAPETKQTSVGEPC
Secondary structure 


















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??????????????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1ikt chain A

3D model

Region: 28 - 135
Aligned: 106
Modelled: 108
Confidence: 99.5%
Identity: 17%
Fold: SCP-like
Superfamily: SCP-like
Family: Sterol carrier protein, SCP

Phyre2

PDB 1c44 chain A

3D model

Region: 25 - 133
Aligned: 106
Modelled: 109
Confidence: 99.5%
Identity: 26%
Fold: SCP-like
Superfamily: SCP-like
Family: Sterol carrier protein, SCP

Phyre2

PDB 3bn8 chain A

3D model

Region: 57 - 135
Aligned: 78
Modelled: 79
Confidence: 99.4%
Identity: 12%
PDB header:transport protein
Chain: A: PDB Molecule:putative sterol carrier protein 2;
PDBTitle: crystal structure of a putative sterol carrier protein type 2 (af1534)2 from archaeoglobus fulgidus dsm 4304 at 2.11 a resolution

Phyre2

PDB 3bkr chain A

3D model

Region: 55 - 134
Aligned: 80
Modelled: 80
Confidence: 99.4%
Identity: 19%
PDB header:lipid binding protein
Chain: A: PDB Molecule:sterol carrier protein-2 like-3;
PDBTitle: crystal structure of sterol carrier protein-2 like-3 (scp2-2 l3) from aedes aegypti

Phyre2

PDB 3bdq chain B

3D model

Region: 55 - 132
Aligned: 78
Modelled: 78
Confidence: 99.4%
Identity: 18%
PDB header:lipid transport
Chain: B: PDB Molecule:sterol carrier protein 2-like 2;
PDBTitle: room tempreture crystal structure of sterol carrier protein-2 2 like-2

Phyre2

PDB 1pz4 chain A

3D model

Region: 55 - 135
Aligned: 80
Modelled: 81
Confidence: 99.3%
Identity: 16%
Fold: SCP-like
Superfamily: SCP-like
Family: Sterol carrier protein, SCP

Phyre2

PDB 2cfu chain A domain 1

3D model

Region: 47 - 138
Aligned: 92
Modelled: 92
Confidence: 99.2%
Identity: 16%
Fold: SCP-like
Superfamily: SCP-like
Family: Alkylsulfatase C-terminal domain-like

Phyre2

PDB 1wfr chain A

3D model

Region: 63 - 135
Aligned: 73
Modelled: 73
Confidence: 99.0%
Identity: 14%
Fold: SCP-like
Superfamily: SCP-like
Family: Sterol carrier protein, SCP

Phyre2

PDB 2cfu chain A

3D model

Region: 46 - 138
Aligned: 93
Modelled: 93
Confidence: 98.2%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:sdsa1;
PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid.

Phyre2

PDB 2i00 chain A domain 1

3D model

Region: 54 - 132
Aligned: 77
Modelled: 79
Confidence: 96.6%
Identity: 14%
Fold: SCP-like
Superfamily: SCP-like
Family: EF1021 C-terminal domain-like

Phyre2

PDB 2ozg chain A domain 1

3D model

Region: 57 - 132
Aligned: 72
Modelled: 76
Confidence: 96.2%
Identity: 22%
Fold: SCP-like
Superfamily: SCP-like
Family: EF1021 C-terminal domain-like

Phyre2

PDB 2hv2 chain A domain 1

3D model

Region: 57 - 132
Aligned: 74
Modelled: 76
Confidence: 95.5%
Identity: 18%
Fold: SCP-like
Superfamily: SCP-like
Family: EF1021 C-terminal domain-like

Phyre2

PDB 2ozg chain A

3D model

Region: 57 - 132
Aligned: 72
Modelled: 76
Confidence: 95.2%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:gcn5-related n-acetyltransferase;
PDBTitle: crystal structure of gcn5-related n-acetyltransferase (yp_325469.1)2 from anabaena variabilis atcc 29413 at 2.00 a resolution

Phyre2

PDB 2i00 chain D

3D model

Region: 54 - 131
Aligned: 76
Modelled: 78
Confidence: 92.9%
Identity: 14%
PDB header:transferase
Chain: D: PDB Molecule:acetyltransferase, gnat family;
PDBTitle: crystal structure of acetyltransferase (gnat family) from enterococcus2 faecalis

Phyre2

PDB 2hv2 chain D

3D model

Region: 57 - 132
Aligned: 72
Modelled: 76
Confidence: 92.5%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of conserved protein of unknown function from2 enterococcus faecalis v583 at 2.4 a resolution, probable n-3 acyltransferase

Phyre2

PDB 3r1k chain A

3D model

Region: 57 - 132
Aligned: 72
Modelled: 76
Confidence: 79.7%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:enhanced intracellular survival protein;
PDBTitle: crystal structure of acetyltransferase eis from mycobacterium2 tuberculosis h37rv in complex with coa and an acetamide moiety

Phyre2

PDB 3n7z chain D

3D model

Region: 58 - 132
Aligned: 70
Modelled: 75
Confidence: 78.2%
Identity: 14%
PDB header:transferase
Chain: D: PDB Molecule:acetyltransferase, gnat family;
PDBTitle: crystal structure of acetyltransferase from bacillus anthracis

Phyre2

PDB 3d33 chain B

3D model

Region: 53 - 91
Aligned: 32
Modelled: 37
Confidence: 9.2%
Identity: 25%
PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution

Phyre2

PDB 1y76 chain A domain 1

3D model

Region: 2 - 39
Aligned: 38
Modelled: 38
Confidence: 8.5%
Identity: 24%
Fold: L27 domain
Superfamily: L27 domain
Family: L27 domain

Phyre2

PDB 1xn8 chain A

3D model

Region: 118 - 154
Aligned: 37
Modelled: 37
Confidence: 7.5%
Identity: 27%
Fold: Hypothetical protein YqbG
Superfamily: Hypothetical protein YqbG
Family: Hypothetical protein YqbG

Phyre2
1

d1ikta_
2

d1c44a_
3

c3bn8A_
4

c3bkrA_
5

c3bdqB_
6

d1pz4a_
7

d2cfua1
8

d1wfra_
9

c2cfuA_
10

d2i00a1
11

d2ozga1
12

d2hv2a1
13

c2ozgA_
14

c2i00D_
15

c2hv2D_
16

c3r1kA_
17

c3n7zD_
18

c3d33B_
19

d1y76a1
20

d1xn8a_
21



22



23






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1ikta_



99.5 17 Fold:SCP-like
Superfamily:SCP-like
Family:Sterol carrier protein, SCP
2d1c44a_



99.5 26 Fold:SCP-like
Superfamily:SCP-like
Family:Sterol carrier protein, SCP
3c3bn8A_



99.4 12 PDB header:transport protein
Chain: A: PDB Molecule:putative sterol carrier protein 2;
PDBTitle: crystal structure of a putative sterol carrier protein type 2 (af1534)2 from archaeoglobus fulgidus dsm 4304 at 2.11 a resolution
4c3bkrA_



99.4 19 PDB header:lipid binding protein
Chain: A: PDB Molecule:sterol carrier protein-2 like-3;
PDBTitle: crystal structure of sterol carrier protein-2 like-3 (scp2-2 l3) from aedes aegypti
5c3bdqB_



99.4 18 PDB header:lipid transport
Chain: B: PDB Molecule:sterol carrier protein 2-like 2;
PDBTitle: room tempreture crystal structure of sterol carrier protein-2 2 like-2
6d1pz4a_



99.3 16 Fold:SCP-like
Superfamily:SCP-like
Family:Sterol carrier protein, SCP
7d2cfua1



99.2 16 Fold:SCP-like
Superfamily:SCP-like
Family:Alkylsulfatase C-terminal domain-like
8d1wfra_



99.0 14 Fold:SCP-like
Superfamily:SCP-like
Family:Sterol carrier protein, SCP
9c2cfuA_



98.2 16 PDB header:hydrolase
Chain: A: PDB Molecule:sdsa1;
PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid.
10d2i00a1



96.6 14 Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
11d2ozga1



96.2 22 Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
12d2hv2a1



95.5 18 Fold:SCP-like
Superfamily:SCP-like
Family:EF1021 C-terminal domain-like
13c2ozgA_



95.2 22 PDB header:transferase
Chain: A: PDB Molecule:gcn5-related n-acetyltransferase;
PDBTitle: crystal structure of gcn5-related n-acetyltransferase (yp_325469.1)2 from anabaena variabilis atcc 29413 at 2.00 a resolution
14c2i00D_



92.9 14 PDB header:transferase
Chain: D: PDB Molecule:acetyltransferase, gnat family;
PDBTitle: crystal structure of acetyltransferase (gnat family) from enterococcus2 faecalis
15c2hv2D_



92.5 18 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of conserved protein of unknown function from2 enterococcus faecalis v583 at 2.4 a resolution, probable n-3 acyltransferase
16c3r1kA_



79.7 18 PDB header:transferase
Chain: A: PDB Molecule:enhanced intracellular survival protein;
PDBTitle: crystal structure of acetyltransferase eis from mycobacterium2 tuberculosis h37rv in complex with coa and an acetamide moiety
17c3n7zD_



78.2 14 PDB header:transferase
Chain: D: PDB Molecule:acetyltransferase, gnat family;
PDBTitle: crystal structure of acetyltransferase from bacillus anthracis
18c3d33B_



9.2 25 PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution
19d1y76a1



8.5 24 Fold:L27 domain
Superfamily:L27 domain
Family:L27 domain
20d1xn8a_



7.5 27 Fold:Hypothetical protein YqbG
Superfamily:Hypothetical protein YqbG
Family:Hypothetical protein YqbG
21c2vd2A_



not modelled 6.5 23 PDB header:transferase
Chain: A: PDB Molecule:atp phosphoribosyltransferase;
PDBTitle: the crystal structure of hisg from b. subtilis
22c3fgxA_



not modelled 5.9 17 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:rbstp2171;
PDBTitle: structure of uncharacterised protein rbstp2171 from bacillus2 stearothermophilus
23c2nsfA_



not modelled 5.3 12 PDB header:isomerase
Chain: A: PDB Molecule:hypothetical protein cgl3021;
PDBTitle: crystal structure of the mycothiol-dependent maleylpyruvate isomerase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0