Job Description P0A9K1 Confidence 98.22% Date Wed Jan 25 15:20:20 GMT 2012 Rank 50 Aligned Residues 126 % Identity 18% Template c3tmiA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx58; PDBTitle: structural basis for rna recognition and activation of rig-i Resolution 2.90 Å

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		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		P	I	L	A	R	N	E	A	Q	L	H	Y	L	K	A	I	E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I	H	K	D	.	.	.	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A
Query Conservation																																																		.	.	.
Alig confidence							.																																											.	.	.																		.	.	.	.	.	.	.
Template Conservation							.																																																															.	.	.	.	.	.	.
Template Sequence		P	F	K	P	R	.	N	Y	Q	L	E	L	A	L	P	A	M	K	G	K	N	T	I	I	C	A	P	T	G	C	G	K	T	F	V	S	L	L	I	C	E	H	H	L	K	K	F	P	Q	G	Q	K	G	K	V	V	F	F	A	N	Q	I	P	V	Y	E	Q	Q	.	.	.	.	.	.	.	K	S	V	F	S
Template Known Secondary structure							.						T	T					T	T									T	T	S																T	S		T	T										S	S								.	.	.	.	.	.	.
Template Predicted Secondary structure							.																																																															.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.								.	.	.	310	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260								.	.	.	.	.	.	.				.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																						.	.	.	.	.	.	.								.	.	.
Query SS confidence																																						.	.	.	.	.	.	.								.	.	.
Query Sequence		P	Y	F	R	P	V	Y	D	V	L	V	R	R	L	G	A	S	F	M	Q	Y	C	L	R	P	E	I	G	K	V	E	I	A	P	F	A	.	.	.	.	.	.	.	Y	M	R	G	R	T	F	.	.	.	E	N	A	V	V	I	L	D	E	A	Q	N	V	T
Query Conservation																																						.	.	.	.	.	.	.								.	.	.
Alig confidence																																						.	.	.	.	.	.	.								.	.	.
Template Conservation
Template Sequence		K	Y	F	E	R	H	G	Y	R	V	T	G	I	S	G	A	T	A	E	N	V	P	V	E	Q	I	V	E	N	N	D	I	I	I	L	T	P	Q	I	L	V	N	N	L	K	K	G	T	I	P	S	L	S	I	F	T	L	M	I	F	D	E	C	H	N	T	S
Template Known Secondary structure					T	T	T	T								T	T	T		S	S	S								T		S															T	T	S	S			G	G	G		S						T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions