50 c3tmiA_ Probab=98.22   E-value=1.3e-06  Score=62.20  Aligned_columns=126  Identities=18%

Q ss_pred             CCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCCHHHHHHCCCCCCCHHHHHH
Q ss_conf             867589999999996113846999758986088999999999998199---65899973781665313446799899999
Q batch____       148 PILARNEAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD---VDRIIVTRPVLQADEDLGFLPGDIAEKFA  224 (354)
Q Consensus       148 pi~prn~~Q~~yl~Ai~s~~LV~i~GpAGTGKTlLAla~al~~L~~~~---~~kIIItRPtV~agedLGfLPGdl~EKl~  224 (354)
                      |+.|| .-|...++++...+=+++..|+|+|||+.++..+++.+....   ..|+++..|+.+..+..       .+-+.
T Consensus         1 ~~~pr-~yQ~e~~~~~l~g~n~ii~~~TGsGKT~~a~~~i~~~l~~~~~~~~~k~Lii~Pt~~L~~Q~-------~~~~~   72 (670)
T c3tmiA_           1 PFKPR-NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ-------KSVFS   72 (670)
T ss_dssp             CCCCC-HHHHHTTHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTSCTTCCCCEEEECSSHHHHHHH-------HHHHH
T ss_pred             CCCCC-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH-------HHHHH
T ss_conf             97889-79999999997499899990899865899999999999724235797699982899999999-------99999


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECH-------HHCCCCC---CCCEEEEECCCCCC
Q ss_conf             999999999998629526788864125858996312-------2068875---66489996613299
Q batch____       225 PYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFA-------YMRGRTF---ENAVVILDEAQNVT  281 (354)
Q Consensus       225 P~l~pi~D~L~~ll~~~~~~~~~~~~~g~IEi~pla-------yiRGRTL---~n~~IIIDEAQNlt  281 (354)
                      -|+.+..-....+.+....+...........+.=.+       ..++...   +..+||+|||.++.
T Consensus        73 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~iii~T~~~l~~~l~~~~~~~~~~~~~iIiDEaH~~~  139 (670)
T c3tmiA_          73 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS  139 (670)
T ss_dssp             HHHTTTTCCEEEECTTTCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGSS
T ss_pred             HHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCHHCC
T ss_conf             8447687699998679766788887413898999987899888752754570117788850302203