Job Description P0A9K1 Confidence 97.41% Date Wed Jan 25 15:20:20 GMT 2012 Rank 129 Aligned Residues 164 % Identity 18% Template c1s3sA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c Resolution 2.90 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	R	S	H	K	Q	R	E	E	E	S	V	T	S	L	V	Q	M	G	G	V	E	A	I	G	M	A	R	D	S	R	D	T	S	P	I	L	A	R	N	E	A	Q	L	H	Y	L	K	A	I	E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I
Query Conservation
Alig confidence																											.	.									.																																											.	.
Template Conservation																											.	.									.																																											.	.
Template Sequence		P	I	K	R	E	D	E	E	E	S	L	N	E	V	G	Y	D	D	V	G	G	C	R	K	Q	.	.	L	A	Q	I	K	E	M	V	.	E	L	P	L	R	H	P	A	L	F	K	A	I	G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R	A	V	A	N	E	T	.	.
Template Known Secondary structure			B				T	T				T	T	S			G	G	G			S					.	.									.							T	T																		S	T	T	S	S													.	.
Template Predicted Secondary structure																											.	.									.																																											.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	D	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A	P	Y	F	R	P	V	Y	D	V	L	V	R	R	L	G	A	S	F	M	Q	Y	C	L	R	P	E	I	G	K	V	E	I	A	P	F	A	Y	M	R	G	R	T	F	E	N	A	V	V
Query Conservation
Alig confidence		.	.	.							.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation		.	.	.							.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Sequence		.	.	.	G	A	F	F	F	L	.	.	.	.	I	N	G	P	E	I	M	S	K	L	A	G	E	S	E	S	N	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	F	E	E	A	E	K	N	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	.	.
Template Known Secondary structure		.	.	.	T						.	.	.	.								T	S		T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T		S							T	G	G	G	T				S	S	S			.	.
Template Predicted Secondary structure		.	.	.							.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template SS confidence
					263	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.																	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		I	L	D	E	A	Q	N	V	T	A	A	Q	M	K	M	F	L	T	R	L	G	E	N	V	T	V	I	V	N	G	.	.	.	D	I	T	Q	C	D
Query Conservation																																.	.	.
Alig confidence		.	.																													.	.	.
Template Conservation		.	.
Template Sequence		.	.	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K	Q	R	A	H	V	I	V	M	A	A	T	N	R	P	N	S	I	D
Template Known Secondary structure		.	.		T	T																	G	G	G									S		G	G	G	S
Template Predicted Secondary structure		.	.
Template SS confidence
				318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions