129 c1s3sA_ Probab=97.41   E-value=0.00074  Score=44.83  Aligned_columns=164  Identities=18%

Q ss_pred             CCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             43356786863331155404412345666433788867589999999996113846999758986088999999999998
Q batch____       113 DSRSHKQREEESVTSLVQMGGVEAIGMARDSRDTSPILARNEAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALI  192 (354)
Q Consensus       113 ~~~~~~~~~~~s~~~l~~~~~~~~~~~~~e~~~~~pi~prn~~Q~~yl~Ai~s~~LV~i~GpAGTGKTlLAla~al~~L~  192 (354)
                      ...+..........+..++||.+++  .++.++.. ..|......+-=--+..+.-+++.||+|||||+++-+.+-+.  
T Consensus       166 ~~~~~~~~~~~~~~~~~dIgGl~~~--k~~l~~~i-~~pl~~~~~~~~~g~~~~~~~Ll~Gp~G~GKt~l~~~ia~~~--  240 (436)
T c1s3sA_         166 PIKREDEEESLNEVGYDDVGGCRKQ--LAQIKEMV-ELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--  240 (436)
T ss_dssp             CBCCCTTCCCTTSCCGGGCCSCHHH--HHHHHHHH-HHHHHCTTHHHHCCCCCCCEEEEECSTTSSHHHHHHHHHHHH--
T ss_pred             CCCCCCCCCCCCCCCHHHHHCHHHH--HHHHHHHH-HHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC--
T ss_conf             4443210123567895342054999--99999999-975018898974889987538986799899789999998744--


Q ss_pred             HCCCCEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECHHHCCCCCCCCEE
Q ss_conf             19965899973781665313446799899999999999999998629526788864125858996312206887566489
Q batch____       193 HKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVV  272 (354)
Q Consensus       193 ~~~~~kIIItRPtV~agedLGfLPGdl~EKl~P~l~pi~D~L~~ll~~~~~~~~~~~~~g~IEi~playiRGRTL~n~~I  272 (354)
                         ...++.    +...+-++-.+|..+.++.                ...+......+..|-+..+.-+-+..-.+.  
T Consensus       241 ---~~~~~~----i~~~~l~~~~~g~~e~~l~----------------~~f~~a~~~~p~ii~lDeid~l~~~~~~~~--  295 (436)
T c1s3sA_         241 ---GAFFFL----INGPEIMSKLAGESESNLR----------------KAFEEAEKNAPAIIFIDELDAIAPKREKTH--  295 (436)
T ss_dssp             ---TCEEEE----EEHHHHHTSCTTHHHHHHH----------------HHHHHHHHTCSEEEEEETGGGTCCCSSSCC--
T ss_pred             ---CCCEEE----EEHHHHCCCCCCHHHHHHH----------------HHHHHHHHCCCCEEEEHHHHHHHCCCCCCC--
T ss_conf             ---995899----7306870010015888899----------------999999750994898400003210257887--


Q ss_pred             EEECCCCCCHHHHHHHHHHCCCCCEEEEEC---CHHHHC
Q ss_conf             996613299999999998488987899978---815743
Q batch____       273 ILDEAQNVTAAQMKMFLTRLGENVTVIVNG---DITQCD  308 (354)
Q Consensus       273 IIDEAQNlt~~emK~iLTRiGenSKIVl~G---D~~QiD  308 (354)
                        .+..+-...++..++..+..+.+++++|   ++..+|
T Consensus       296 --~~~~~~~~~~~~~~~~~~~~~~~v~vi~tt~~~~~l~  332 (436)
T c1s3sA_         296 --GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID  332 (436)
T ss_dssp             --CTTHHHHHHHHHHHHHHCCGGGCEEEEEEESCGGGSC
T ss_pred             --CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHCC
T ss_conf             --4588999999986430222469879998448958888