Return to main results Retrieve Phyre Job Id

Job DescriptionP75914
Confidence60.76%DateThu Jan 5 12:15:58 GMT 2012
Rank73Aligned Residues223
% Identity11%Templatec3irsB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:uncharacterized protein bb4693; PDBTitle: crystal structure of uncharacterized tim-barrel protein bb4693 from2 bordetella bronchiseptica
Resolution1.76 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........ 10.........20.........30.........40.........50..
Predicted Secondary structure 

............................






















Query SS confidence 








. . . . . . . . . . . . . . . . . . . . . . . . . . . .










































Query Sequence  MYPVDLHMH. . . . . . . . . . . . . . . . . . . . . . . . . . . . TVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDMEDAPHHWH
Query Conservation 
  



 
............................
  
 

    

 
  
   
   





            
Alig confidence 








............................



.





































Template Conservation 
 


 
 
                                .        

  
   

  

             
  
Template Sequence  LKIIDFRLRPPAMGFLNARIYTRPDIRNRFTRQLGFEPAPS. AEEKSLELMFEEMAAAGIEQGVCVGRNSSVLGSVSNAD
Template Known Secondary structure 

SSB

SSTTGGGS
T



.TT
T

TTT

Template Predicted Secondary structure 























.



















Template SS confidence 















































































   1........10.........20.........30.........40. ........50.........60.........70.........
 
   53......60.........70.........80.........90.. .......100.........110.........120.........130.
Predicted Secondary structure 














.
















Query SS confidence 







































.






































Query Sequence  FINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDS. LDLIIAGFHEPVFAPHDKATNTQAMIATIASGNVHIISH
Query Conservation              

 
  
 
                   .    
                          
   



Alig confidence 





....





























.






































Template Conservation        ....  
 
              
          
  

              
             
  
  
Template Sequence  VAAVAK. . . . AYPDKFHPVGSIEAATRKEAMAQMQEILDLGIRIVNLEPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMM
Template Known Secondary structure  ....STTT

SSTT



GGGSSS


TT
GGGTT

Template Predicted Secondary structure  ....


























Template SS confidence 















































































   80..... ....90.........100.........110.........120.........130.........140.........150.....
 
   132. ......140.........150.........160.........170.........180...
Predicted Secondary structure 

............................



















Query SS confidence 

. . . . . . . . . . . . . . . . . . . . . . . . . . . .

















































Query Sequence  PG. . . . . . . . . . . . . . . . . . . . . . . . . . . . NPKYEIDVKAVAEAAAKHQVALEINNSSFLHSRKGSEDNCREVAAAVRDA
Query Conservation 
 ............................                      


                     
   
Alig confidence 

............................



































....









Template Conservation                     
    
 
  
  
 
              


    
         ....          
Template Sequence  TGGNAGPDITYTNPEHIDRVLGDFPDLTVVSSHGNWPWVQEIIHVAFRRPNLYLSPDMYLYNLPGH. . . . ADFIQAANSF
Template Known Secondary structure 
SSS
SSSGGGG

TT

GGGTT

TT
GGGGSSSTT....TTT
Template Predicted Secondary structure 


































....
Template SS confidence 















































































   156...160.........170.........180.........190.........200.........210.........220. ........230.
 
   184. ....190.........200.........210.........220.........230......
Predicted Secondary structure 

.
















Query SS confidence 

.


















































Query Sequence  GG. WVALGSDSHTAFTMGEFEECLKILDAVDFPPERILNVSPRRLLNFLESRGM
Query Conservation 
 .    




     
                
 
       
   
     
Alig confidence 

.








....





































Template Conservation 
 







 
....               
       
   

 

 

   
Template Sequence  LADRMLFGTAYP. . . . MCPLKEYTEWFLTLPIKPDAMEKILHGNAERLLAQAGR
Template Known Secondary structure  TTTTB




BT....SS
TS


T


Template Predicted Secondary structure 







....











Template SS confidence 





















































   232.......240... ......250.........260.........270.........280.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions