Job Description P75914 Confidence 60.76% Date Thu Jan 5 12:15:58 GMT 2012 Rank 73 Aligned Residues 223 % Identity 11% Template c3irsB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bb4693; PDBTitle: crystal structure of uncharacterized tim-barrel protein bb4693 from2 bordetella bronchiseptica Resolution 1.76 Å

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		1	.	.	.	.	.	.	.	.																													10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	Y	P	V	D	L	H	M	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	A	S	T	H	A	Y	S	T	L	S	D	Y	I	A	Q	A	K	Q	K	G	I	K	L	F	A	I	T	D	H	G	P	D	M	E	D	A	P	H	H	W	H
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.
Template Conservation																																											.
Template Sequence		L	K	I	I	D	F	R	L	R	P	P	A	M	G	F	L	N	A	R	I	Y	T	R	P	D	I	R	N	R	F	T	R	Q	L	G	F	E	P	A	P	S	.	A	E	E	K	S	L	E	L	M	F	E	E	M	A	A	A	G	I	E	Q	G	V	C	V	G	R	N	S	S	V	L	G	S	V	S	N	A	D
Template Known Secondary structure							S	S	B			S	S	T	T	G	G	G	S																	T							.			T	T													T												T	T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		F	I	N	M	R	I	W	P	R	V	V	D	G	V	G	I	L	R	G	I	E	A	N	I	K	N	V	D	G	E	I	D	C	S	G	K	M	F	D	S	.	L	D	L	I	I	A	G	F	H	E	P	V	F	A	P	H	D	K	A	T	N	T	Q	A	M	I	A	T	I	A	S	G	N	V	H	I	I	S	H
Query Conservation																																										.
Alig confidence								.	.	.	.																															.
Template Conservation								.	.	.	.
Template Sequence		V	A	A	V	A	K	.	.	.	.	A	Y	P	D	K	F	H	P	V	G	S	I	E	A	A	T	R	K	E	A	M	A	Q	M	Q	E	I	L	D	L	G	I	R	I	V	N	L	E	P	G	V	W	A	T	P	M	H	V	D	D	R	R	L	Y	P	L	Y	A	F	C	E	D	N	G	I	P	V	I	M	M
Template Known Secondary structure								.	.	.	.		S	T	T	T										S	S														T	T								G	G	G	S	S	S				T	T		G	G	G										T	T
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		80	.	.	.	.	.					.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		132	.																													.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	K	Y	E	I	D	V	K	A	V	A	E	A	A	A	K	H	Q	V	A	L	E	I	N	N	S	S	F	L	H	S	R	K	G	S	E	D	N	C	R	E	V	A	A	A	V	R	D	A
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation																																																																				.	.	.	.
Template Sequence		T	G	G	N	A	G	P	D	I	T	Y	T	N	P	E	H	I	D	R	V	L	G	D	F	P	D	L	T	V	V	S	S	H	G	N	W	P	W	V	Q	E	I	I	H	V	A	F	R	R	P	N	L	Y	L	S	P	D	M	Y	L	Y	N	L	P	G	H	.	.	.	.	A	D	F	I	Q	A	A	N	S	F
Template Known Secondary structure			S	S	S		S	S	S	G	G	G	G													T	T							G	G	G	T	T													T	T						G	G	G	G	S	S	S	T	T		.	.	.	.								T	T	T
Template Predicted Secondary structure																																																																				.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.	230	.
		184	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		G	G	.	W	V	A	L	G	S	D	S	H	T	A	F	T	M	G	E	F	E	E	C	L	K	I	L	D	A	V	D	F	P	P	E	R	I	L	N	V	S	P	R	R	L	L	N	F	L	E	S	R	G	M
Query Conservation				.
Alig confidence				.										.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		L	A	D	R	M	L	F	G	T	A	Y	P	.	.	.	.	M	C	P	L	K	E	Y	T	E	W	F	L	T	L	P	I	K	P	D	A	M	E	K	I	L	H	G	N	A	E	R	L	L	A	Q	A	G	R
Template Known Secondary structure		T	T	T	T	B						B	T	.	.	.	.	S	S											T	S												T
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions