Job Description P75914 Confidence 99.88% Date Thu Jan 5 12:15:58 GMT 2012 Rank 11 Aligned Residues 198 % Identity 16% Template c3e0dA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit Resolution 4.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure															.																					.	.
Query SS confidence															.																					.	.
Query Sequence		M	Y	P	V	D	L	H	M	H	T	V	A	S	.	T	H	A	Y	S	T	L	S	D	Y	I	A	Q	A	K	Q	K	G	I	K	.	.	L	F	A	I	T	D	H	G	P	D	M	E	D	A	P	H	H	W	H	F	I	N	M	R	I	W	P	R	V	V	D	G	V	G	I	L	R	G	I	E	A	N	I	K
Query Conservation															.																					.	.
Alig confidence															.																					.	.																								.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.
Template Sequence		L	K	F	A	H	L	H	Q	H	T	Q	F	S	L	L	N	G	A	A	K	L	Q	D	L	L	K	W	V	K	E	T	T	P	E	D	P	A	L	A	M	T	D	H	G	N	L	F	G	A	V	E	F	Y	K	K	A	T	A	M	.	.	.	.	.	.	.	.	G	V	K	P	I	I	G	Y	E	A	Y	V	A
Template Known Secondary structure								S	B			T	T	S	T	T	T																		S	S									T			T	T										T	T	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.									.	.	.	.	.	.	70	.	.	.	.	.	.
		78	.													80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Query Sequence		N	V	.	.	.	.	.	.	.	.	.	.	.	.	D	G	E	I	D	C	S	G	K	M	F	D	S	L	D	L	I	I	A	G	F	H	E	P	.	.	V	F	A	P	H	D	K	A	T	N	T	Q	A	M	I	A	T	I	A	S	G	N	V	H	I	I	S	H	P	G	N	P	K	Y	E	I	D	V	K	A
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation
Template Sequence		A	E	S	R	F	D	R	K	R	G	G	Y	F	H	L	T	L	L	A	K	D	F	T	G	Y	Q	N	L	V	R	L	A	S	R	A	Y	L	E	G	F	Y	E	K	P	R	I	D	R	E	I	L	R	E	H	A	Q	G	L	I	A	L	S	G	C	L	G	A	E	I	P	Q	F	I	L	Q	D	R	L	D	L
Template Known Secondary structure		S	S		T	T																S																	T		B	S	S	S	B										T		T	T							S	T	T	B								T	T
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
								144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.	.	.	.	.	.																																																										.
Query SS confidence		.	.	.	.	.	.																																																										.
Query Sequence		.	.	.	.	.	.	V	A	E	A	A	A	K	H	Q	V	A	L	E	I	N	N	S	S	F	L	H	S	R	K	G	S	E	D	N	C	R	E	V	A	A	A	V	R	D	A	G	G	W	V	A	L	G	S	D	S	H	T	A	F	T	M	G	.	E	F	E	E	C	L	K	I	L	D
Query Conservation		.	.	.	.	.	.																																																										.
Alig confidence		.	.	.	.	.	.																.	.	.	.																																							.
Template Conservation																							.	.	.	.
Template Sequence		A	E	A	R	L	N	E	D	L	S	I	F	G	D	R	F	F	I	E	I	Q	.	.	.	.	N	H	G	L	P	E	Q	K	K	V	N	Q	V	L	K	E	F	A	R	K	Y	G	L	G	M	V	A	T	N	N	G	H	Y	V	R	K	E	D	A	R	A	H	E	V	L	L	A	I	Q
Template Known Secondary structure														G	G	G							.	.	.	.		S	S																		T	T									B	S	B	S	S	G	G	G
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions