Job Description Q47690 Confidence 100.00% Date Thu Jan 5 12:37:05 GMT 2012 Rank 3 Aligned Residues 273 % Identity 23% Template d1umya_ SCOP info TIM beta/alpha-barrel Homocysteine S-methyltransferase Homocysteine S-methyltransferase Resolution 2.5

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	P	L	R	A	L	L	D	K	Q	D	I	L	L	L	D	G	A	M	A	T	E	L	E	A	R	G	C	N	L	A	D	S	L	W	S	A	K	V	L	V	E	N	P	E	L	I	R	E	V	H	L	D	Y	Y	R	A	G	A	Q	C	A	I	T	A	S	Y	Q	A	T	P	A	G	F	A	A	R	G	L
Query Conservation
Alig confidence																																				.																																					.	.	.	.	.	.	.	.	.
Template Conservation																																				.																																					.	.	.	.	.	.	.	.	.
Template Sequence		K	R	G	I	L	E	R	L	N	A	G	E	V	V	I	G	D	G	G	F	V	F	A	L	E	K	R	G	Y	V	K	A	G	P	.	W	T	P	E	A	A	V	E	H	P	E	A	V	R	Q	L	H	R	E	F	L	R	A	G	S	N	V	M	Q	T	F	T	F	Y	A	S	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T																	T	S	S		T	T	T	.				T																				T													.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	A	Q	S	K	A	L	I	G	K	S	V	E	L	A	R	K	A	R	E	A	Y	L	A	E	N	P	Q	A	G	T	L	L	V	A	G	S	V	G	P	Y	G	A	Y	L	A	D	G	S	E	Y	R	G	D	Y	H	C	S	V	E	A	F	Q	A	F	H	R	P	R	V	E	A	L	L	D	A	G	A	D
Query Conservation
Alig confidence		.	.	.																				.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																				.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	S	G	Q	K	V	N	E	A	A	C	D	I	A	R	Q	V	A	D	E	.	.	.	.	.	.	.	.	G	D	A	L	V	A	G	G	V	S	Q	T	P	S	Y	L	S	C	K	S	E	.	.	.	.	.	.	.	.	.	T	E	V	K	K	I	F	H	Q	Q	L	E	V	F	M	K	K	N	V	D
Template Known Secondary structure		.	.	.																			T	.	.	.	.	.	.	.	.	T	T															T	T				.	.	.	.	.	.	.	.	.																	T	T		S
Template Predicted Secondary structure		.	.	.																				.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
					95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.									.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.										.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		L	L	A	C	E	T	L	P	N	F	S	E	I	E	A	L	A	E	L	L	T	A	Y	P	R	A	R	A	W	F	S	F	T	L	R	D	S	E	H	L	S	D	G	T	P	L	R	D	V	V	A	L	L	A	G	Y	P	Q	V	V	A	L	G	I	N	C	.	I	A	L	E	N	T	T	A	A	L	Q	H	L
Query Conservation																																																																				.
Alig confidence																								.																.																		.										.
Template Conservation																								.																.																		.
Template Sequence		F	L	I	A	E	Y	F	E	H	V	E	E	A	V	W	A	V	E	A	L	K	T	.	S	G	K	P	I	A	A	T	M	C	I	G	P	E	G	.	D	L	H	G	V	S	P	G	E	C	A	V	R	L	V	K	A	.	G	A	A	I	V	G	V	N	C	H	F	D	P	S	T	S	L	Q	T	I	K	L	M
Template Known Secondary structure									S														T	.	T		S										T	T		.		T	T														T	.	T		S						S	S	S
Template Predicted Secondary structure																								.																.																		.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
							243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.											.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	H	G	L	T	V	L	P	L	V	V	Y	P	N	S	G	E	H	Y	D	A	V	S	K	T	W	H	H	H	G	E	.	.	.	.	.	.	.	.	.	.	H	C	A	Q	L	A	D	Y	L	P	Q	W	Q	A	A	G	A	R	L	I	G	G	C	C	R	T	T	P	A	D	I	A	A	L	K
Query Conservation		.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	G	L	E	A	A	R	L	K	A	Y	L	M	S	Q	P	L	A	Y	H	T	P	D	C	G	K	Q	G	F	I	D	L	P	E	F	P	F	G	L	E	P	R	V	A	T	R	W	D	I	Q	K	Y	A	R	E	A	Y	N	L	G	V	R	Y	I	G	G	C	C	G	F	E	P	Y	H	I	R	A	I	A
Template Known Secondary structure							T	T	T											S	B			T	T			S	S	T	G	G	G	S	T	T	T	T	T	S		G	G	G	B																	T								T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		308	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		312	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions