 |
Job Description | P69222 | Confidence | 32.40% | Date | Wed Jan 25 15:21:01 GMT 2012 |
Rank | 78 | Aligned Residues | 59 |
% Identity | 14% | Template | d2nn6i1 |
SCOP info | OB-fold
| Nucleic acid-binding proteins
| Cold shock DNA-binding domain-like
|
Resolution | 3.35 |
|
 |
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | |
. | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | Q | G | T | V | L | E | T | L | P | N | T | M | F | R | . |
V | E | L | E | N | G | H | V | V | T | A | H | I | S | G | K | M | R | K | N | Y | I | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | L | T | G | D | K | V | T | V | E | L | T | P | Y | D | L | S | K | G | R | I |
Query Conservation |   |
  |   |
|   |
|   |   |   |
|   |   |   |   |
|   | . |
|   |
|   |
|
|   |   |   |
|
|   |
|   |
|
|
|
|
|   |
|
|   | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|
|   |
|   |
|
|   |   |   |
|
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |
|   |   |   |   |
|   |
|   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |
|   |
|   |   |
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|
|   |
|
|
|
|
|   |   |
|   |   |   |   |   |
Template Sequence |   |
V | T | C | K | V | S | S | I | N | S | R | F | A | K | V | H | I | L | Y | V | G | S | M | P | L | K | N | S | F | R | G | T | I | R | K | E | D | V | R | A | T | E | K | D | K | V | E | I | Y | K | S | F | R | P | G | D | I | V | L | A | K | V | I | S | L | G | D | A | Q | S | N | Y |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  | S | S | S | S |
|
|
|
| S | S |
| S |
|  |  |  |  | G | G | G | T |
| S | S |
|
|
|
| G | G | G | T |
|
| S | S | S |  |  |  |  |  |  |  |  |  |  | T | T | T | T |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
71 | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|