Job Description P69222 Confidence 67.46% Date Wed Jan 25 15:21:01 GMT 2012 Rank 46 Aligned Residues 58 % Identity 16% Template c2c35F_ PDB info PDB header:polymerase Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii Resolution 2.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	Q	G	T	V	L	E	T	L	P	N	T	M	F	R	V	E	L	E	N	G	H	V	V	T	A	H	I	S	G	K	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	N	Y	I	R	I	L	T	G	D	K	V	T	V	E	L	T	P	Y	D	L	S	K	G	R	I
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.				.
Template Sequence		V	V	D	A	V	V	T	Q	V	N	K	V	G	L	F	.	T	E	I	.	G	P	M	S	C	F	I	S	R	H	S	I	P	S	E	M	E	F	D	P	N	S	N	P	P	C	Y	K	T	M	D	E	D	I	V	I	Q	Q	D	D	E	I	R	L	K	I	V	G	T	R	V	D	K	N	D	I
Template Known Secondary structure												T	T				.				.	T	T							G	G	G	S		S	S					S	S	S	S	S						T	T	S	S					T	T														T	T
Template Predicted Secondary structure																	.				.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions