Job Description P13656 Confidence 94.61% Date Thu Jan 5 11:33:39 GMT 2012 Rank 55 Aligned Residues 211 % Identity 13% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		585	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.		.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		P	K	H	V	Y	A	P	Y	V	D	F	T	L	N	T	I	P	D	L	A	A	L	A	K	N	H	N	V	N	.	H	F	T	L	A	F	V	V	S	K	D	A	N	T	C	L	P	T	W	G	T	A	Y	G	M	Q	N	Y	A	Q	Y	S	K	I	K	A	L	R	E	A	G	G	D	V	M	L	S	I	G	G
Query Conservation																															.
Alig confidence																	.	.	.												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	R	L	S	V	A	P	X	V	D	R	T	D	R	H	.	.	.	F	R	F	L	V	R	Q	V	S	L	G	V	R	L	Y	T	E	X	T	V	D	Q	A	V	L	R	G	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	L	L	A	F	R	P	E	E	H	P	I	A	L	Q	L	A	G
Template Known Secondary structure			S							T	T	T		S			.	.	.										S	S	S	B														S			.	.	.	.	.	.	.	.	.	.	.	.	.	.								G	G	G		S
Template Predicted Secondary structure																	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.				.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.															.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		664	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.												.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	N	A	P	L	A	A	S	C	K	N	V	D	D	L	M	Q	H	Y	Y	D	I	V	D	N	L	N	L	K	V	L	D	F	.	.	.	.	.	.	.	.	.	.	.	D	I	E	G	T	W	V	A	D	Q	A	S	I	E	R	R	N	L	A	V	K	K	V	Q	D	K	W	K	S	E	G	K	D	I	A
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.									.															.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.									.																																	.	.	.	.	.
Template Sequence		S	.	.	.	.	.	.	.	.	.	.	D	P	K	S	L	A	E	A	.	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	.	.	.	.	.	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T
Template Known Secondary structure		S	.	.	.	.	.	.	.	.	.	.									.							T	T		S										S							T		G	G	G	G	.	.	.	.	.	G	G														T	T		S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.									.																																	.	.	.	.	.
Template SS confidence
		67											.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.						.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		733	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	Y	T	L	P	I	L	P	T	G	L	T	P	E	G	M	N	V	L	S	D	A	K	A	K	G	V	E	L	A	G	V	N	V	M	T	M	D	Y	G	N	A	I	C	Q	S	A	N	T	E	G	Q	N	I	H	G	K	C	A	T	S	A	I	A	N	L	H	S	Q	L	K	G	L	H	P	N	K	S	D
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Sequence		V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	W	V	H	R	L	K	.	.	.	.	.
Template Known Secondary structure						S		B	T	T																	T	T									S		B		T	T	S		T	T	G	G	G	T	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.														.	.	.	.	.	190	.	.
		813	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	I	D	A	M	M	G	T	T	P	M	V	G	V	N	D	V	Q	G	E	V	F	Y	L	S	D	A	R	L	V	M	Q	D	A	Q	K	R	N	L	G	M
Query Conservation
Alig confidence		.	.	.	.															.	.	.	.
Template Conservation		.	.	.	.															.	.	.	.
Template Sequence		.	.	.	.	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	.	.	.	.	R	S	L	E	E	A	L	F	H	L	K	R	V	D	G	V	X	L	G	R
Template Known Secondary structure		.	.	.	.				T	T	S						S	S		.	.	.	.		S									T	T	S	S					S
Template Predicted Secondary structure		.	.	.	.															.	.	.	.
Template SS confidence
						193	.	.	.	.	.	.	200	.	.	.	.	.	.					.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions