 |
Job Description | P13656 | Confidence | 20.10% | Date | Thu Jan 5 11:33:39 GMT 2012 |
Rank | 133 | Aligned Residues | 85 |
% Identity | 13% | Template | c1vmeB_ |
PDB info |
PDB header:electron transport | Chain: B: PDB Molecule:flavoprotein; |
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
|
Resolution | 1.80 Å |
|
 |
  |   |
628 | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | L | P | T | W | G | T | A | Y | G | M | Q | N | Y | A | Q | Y | S | K | I | K | A | L | R | E | A | G | G | D | V | M | L | S | I | G | G | A | N | N | A | P | L | A | A | S | C | K | N | V | D | D | L | M | Q | H | Y | Y | D | I | V | D | N | L | N | L | K | V | L | D | F | D | I | E | G | T | W | V | A | D | Q |
Query Conservation |   |
|   |
|   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|
|
|   |
|
|
|
|
|
|   |
|   |   |
|
|   |   |
|   |   |
|   |   |
|
|
|
|
|   |   |
|
|
|   |
|
|   |   |   |
|
|
|
|
|
|
|   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   | . |
|
|
|
|
|   | . | . | . | . | . |   |
|   |
|   |   |   |   |   |   |   |
|   |   | . | . | . | . |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
G | V | S | T | Y | E | A | E | I | H | P | L | X | R | F | T | L | L | E | I | I | D | K | A | N | Y | E | K | P | V | L | V | . |
F | G | V | H | G | W | . |
. |
. |
. |
. |
A | P | S | A | E | R | T | A | G | E | L | L | K | E | . |
. |
. |
. |
T | K | F | R | I | L | S | F | T | E | I | K | G | S | N | X | D | E |
Template Known Secondary structure |   |
 |  |
|  |  | T | T |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  | . |  |  |  |
|
|
| . | . | . | . | . |
|
| T | T | S |
|
|  |  |  |  |  |  | T | . | . | . | . | S | S |
|  |  |  |  |  |  |  |  |
| S | S | S |
|
| T |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  | . |  |  |
|
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
314 | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | |
. | . | . | . | 350 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 360 | . | . | . | . | . | |
|
|
|
. | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . |
  |
  |   |
708 | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | S | I | E | R | R | N | L | A | V | K | K | V | Q | D |
Query Conservation |   |
  |   |   |   |
|
|   |   |
|
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
R | K | I | E | E | A | I | S | L | L | K | K | E | L | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
384 | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|