Job Description P13656 Confidence 99.40% Date Thu Jan 5 11:33:39 GMT 2012 Rank 38 Aligned Residues 253 % Identity 17% Template c1jneA_ PDB info PDB header:hormone/growth factor Chain: A: PDB Molecule:imaginal disc growth factor-2; PDBTitle: crystal structure of imaginal disc growth factor-2 Resolution 1.70 Å

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		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.			.	.	.	.	.	.	660	.	.	.	.	.	.	.	.								.	670	.	.	.	.	.	.	.				.	.
Predicted Secondary structure																																												.	.																.	.	.	.	.	.	.										.	.	.
Query SS confidence																																												.	.																.	.	.	.	.	.	.										.	.	.
Query Sequence		V	N	H	F	T	L	A	F	V	V	S	K	D	A	N	T	C	L	P	T	W	G	T	A	Y	G	M	Q	N	Y	A	Q	Y	S	K	I	K	A	L	R	E	A	.	.	G	G	D	V	M	L	S	I	G	G	A	N	N	A	P	.	.	.	.	.	.	.	L	A	A	S	C	K	N	V	D	.	.	.	D	L
Query Conservation																																												.	.																.	.	.	.	.	.	.										.	.	.
Alig confidence																																		.										.	.																.	.	.	.	.	.	.										.	.	.
Template Conservation																																		.
Template Sequence		C	S	H	L	V	Y	G	Y	A	G	L	R	G	E	N	L	Q	A	Y	S	M	N	E	N	L	D	I	Y	K	H	Q	F	.	S	E	V	T	S	L	K	R	K	Y	P	H	L	K	V	L	L	S	V	G	G	D	H	D	I	D	P	D	H	P	N	K	Y	I	D	L	L	E	G	E	K	V	R	Q	I	G	F
Template Known Secondary structure			S											T	T	T						T	T					T	T	T				.					G	G	G	G	T	S	T	T									T	T					T	T	S	T	T							T
Template Predicted Secondary structure																																		.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700								.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.		.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
Predicted Secondary structure																							.	.	.	.	.	.	.																											.
Query SS confidence																							.	.	.	.	.	.	.																											.
Query Sequence		M	Q	H	Y	Y	D	I	V	D	N	L	N	L	K	V	L	D	F	D	I	E	.	.	.	.	.	.	.	G	T	W	V	A	D	Q	A	S	I	E	R	R	N	L	A	V	K	K	V	Q	D	K	W	K	S	.	E	G	K	D	I	A	I	W	Y	T	L	P	I	L	P	T	G	L	T	P	E	G	M	N	V
Query Conservation																							.	.	.	.	.	.	.																											.
Alig confidence																							.	.	.	.	.	.	.															.												.																	.	.	.	.	.	.
Template Conservation																																												.																													.	.	.	.	.	.
Template Sequence		I	R	S	A	Y	E	L	V	K	T	Y	G	F	D	G	L	D	L	A	Y	Q	F	P	K	N	K	P	R	K	V	I	V	D	P	H	A	A	L	H	K	E	Q	.	F	T	A	L	V	R	D	V	K	D	S	L	R	A	D	G	F	L	L	S	L	T	V	L	P	N	V	N	.	.	.	.	.	.	S	T	W
Template Known Secondary structure												T	T		S																				T	T								.														T	T	T									T	T			.	.	.	.	.	.
Template Predicted Secondary structure																																												.																													.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.							.	.	.
		752	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.												.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	D	A	K	A	K	G	V	E	L	A	G	V	N	V	M	T	M	D	Y	G	N	A	I	C	Q	S	A	N	T	E	G	Q	N	I	H	G	K	C	.	.	.	.	.	.	.	.	.	.	.	A	T	S	A	I	A	N	L	H	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	F	D	I	P	A	L	N	G	L	V	D	F	V	N	L	A	T	F	D	F	L	T	P	A	R	N	P	E	E	A	D	Y	S	A	P	I	Y	H	P	D	G	S	K	D	R	L	A	H	L	N	A	D	F	Q	V	E	Y	W	L	S	Q	G	F	P	S	N	K	I	N	L	G	V	A	T	Y	G	N	A	W
Template Known Secondary structure									T	T	T		S									S	S		T	T	T		T	T					S	S		S	S			T	T	S	T	T			T	T		S											T	T			G	G	G							S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
																																							803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	G	L	H	P	N	K	S	D	A	E	I	D	A	M	M	G	T	T	P	M	V	G	V	N	D	V	Q	G	E	V	F	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	T	K	D	S	G	L	E	G	V	P	V	V	P	E	T	S	G	P	A	P	E	G	F	Q	S	Q	K	P	G	L	L	S	Y	A	E	I	C	G	K	L	S	N	P	Q	N	Q	F	L	K	G	N	E	S	P	L	R	R	V	S	D	P	T	K	R	F	G	G	I	A	Y	R	P	V	D	G	Q	I	T
Template Known Secondary structure					G	G	G		S			S	S				S			S	B					T	T	T			T	T									T	T	B			T	G	G	G	G			G	G	G			B						T	T	S	S	S									B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
										836	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.				.	.	.	.	.	.	870	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		.	.	.	.	.	.	.	.	Y	L	S	D	A	R	L	V	M	Q	D	A	Q	K	R	N	L	G	M	V	G	I	W	S	I	A	R	D	.	.	.	L	P	G	G	T	N	L	S	P
Query Conservation		.	.	.	.	.	.	.	.																													.	.	.
Alig confidence		.	.	.	.	.	.	.	.																													.	.	.
Template Conservation
Template Sequence		E	G	I	W	V	S	Y	D	D	P	D	S	A	S	N	K	A	A	Y	A	R	V	K	N	L	G	G	V	A	L	F	D	L	S	Y	D	D	F	R	G	Q	C	S	G	D	K	Y	P
Template Known Secondary structure																								T	T		S							G	G	G	S		T	T		T	T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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