Job Description P13656 Confidence 99.20% Date Thu Jan 5 11:33:39 GMT 2012 Rank 49 Aligned Residues 254 % Identity 18% Template c1e9lA_ PDB info PDB header:macrophage secretory protein Chain: A: PDB Molecule:ym1 secretory protein; PDBTitle: the crystal structure of novel mammalian lectin ym12 suggests a saccharide binding site Resolution 2.5 Å

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		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.			.	.	.	.	.	.	660	.	.	.	.	.	.	.						.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.
Predicted Secondary structure																																											.	.															.	.	.	.	.
Query SS confidence																																											.	.															.	.	.	.	.
Query Sequence		N	H	F	T	L	A	F	V	V	S	K	D	A	N	T	C	L	P	T	W	G	T	A	Y	G	M	Q	N	Y	A	Q	Y	S	K	I	K	A	L	R	E	A	.	.	G	G	D	V	M	L	S	I	G	G	A	N	N	A	.	.	.	.	.	P	L	A	A	S	C	K	N	V	D	D	L	M	Q	H	Y	Y	D
Query Conservation																																											.	.															.	.	.	.	.
Alig confidence																.	.	.	.	.	.																						.	.															.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		T	H	L	I	Y	A	F	A	G	M	Q	N	N	E	.	.	.	.	.	.	I	T	Y	T	H	E	Q	D	L	R	D	Y	E	A	L	N	G	L	K	D	K	N	T	E	L	K	T	L	L	A	I	G	G	W	K	F	G	P	A	P	F	S	A	M	V	S	T	P	Q	N	R	Q	I	F	I	Q	S	V	I	R
Template Known Secondary structure		S										S	S	S	S	.	.	.	.	.	.				S	S	T	T										G	G	G	G	T		T	T										T	T	T		S								S	S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.							.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		686	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.			.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		I	V	D	N	L	N	L	K	V	L	D	F	D	I	E	G	T	W	V	A	D	Q	.	.	A	S	I	E	R	R	N	L	A	V	K	K	V	Q	D	K	W	K	S	E	G	K	D	I	A	I	W	Y	T	L	P	I	L	P	T	G	L	T	P	E	G	M	N	V	L	S	D	A	K	A	K	G	V	E	L	A
Query Conservation																								.	.
Alig confidence																								.	.
Template Conservation
Template Sequence		F	L	R	Q	Y	N	F	D	G	L	N	L	D	W	Q	Y	P	G	S	R	G	S	P	P	K	D	K	H	L	F	S	V	L	V	K	E	M	R	K	A	F	E	E	E	S	V	E	K	D	I	P	R	L	L	L	T	S	T	G	A	G	I	I	D	V	I	K	S	G	Y	K	I	P	E	L	S	Q	S	L	D
Template Known Secondary structure						T	T		S							S		S	S	S	T	T			T																								T	T	S											S	S																		S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		764	.	.	.	.	.	770	.	.	.	.						.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.													.	.	.
Predicted Secondary structure													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	V	N	V	M	T	M	D	Y	G	N	.	.	.	.	.	A	I	C	Q	S	A	N	T	E	G	Q	N	I	H	G	K	C	A	T	S	A	I	A	N	L	H	S	Q	L	K	G	L	.	.	.	.	.	.	.	.	.	.	.	.	H	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	I	Q	V	M	T	Y	D	L	H	D	P	K	D	G	Y	T	G	E	N	S	P	L	Y	K	S	P	Y	D	I	G	K	S	A	D	L	N	V	D	S	I	I	S	Y	W	K	D	H	G	A	A	S	E	K	L	I	V	G	F	P	A	Y	G	H	T	F	I	L	S	D	P	S	K	T	G	I	G	A	P	T
Template Known Secondary structure											S		G	G	G	S	B				S	S		S	S			T	T			G	G	G	G	G		S											T	T			G	G	G							S								S		T	T			S	T	T		B
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
																	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.												.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	D	A	E	I	D	A	M	M	G	T	T	P	M	V	G	V	N	D	V	Q	G	E	V	F	.	.	.	.	.	.	.	.	.	.	.	Y	L	S	D	A	R	L	V	M	Q	D	A	Q	K	R	N	L	G	M	V	G	I	W	S	I	A	R	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	T	G	P	P	G	K	Y	T	D	E	S	G	L	L	A	Y	Y	E	V	C	T	F	L	N	E	G	A	T	E	V	W	D	A	P	Q	E	V	P	Y	A	Y	Q	G	N	E	W	V	G	Y	D	N	V	R	S	F	K	L	K	A	Q	W	L	K	D	N	N	L	G	G	A	V	V	W	P	L	D	M	D
Template Known Secondary structure									T	T	T			S	S													T	T							T	T	T	T							T	T																		T	T	T	T			S						T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
						864	.	.	.	.	.	870	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	L	P	G	G	T	N	L	S	P
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		D	F	S	G	S	F	C	H	Q	R	H	F	P
Template Known Secondary structure			S	S	S	S	S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions