Job Description P0A9S1 Confidence 91.29% Date Wed Jan 25 15:20:20 GMT 2012 Rank 51 Aligned Residues 92 % Identity 8% Template c3q41B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) Resolution 3.40 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	A	L	T	D	E	V	K	R	R	G	Y	Q	K	A	L	I	V	T	D	K	T	L	V	Q	C	G	V	V	A	K	V	T	D	K	M	D	A	A	G	L	A	W	A	I	Y	D	G	V	V	P	N	P	T	I	T	V	V	K	E	G	L	G	V	F	Q	N	S	G	A	D	Y	L	I	A	I	G	G	G
Query Conservation
Alig confidence																																																	.	.																														.	.
Template Conservation																																																	.	.																														.	.
Template Sequence		S	S	V	W	F	E	M	M	R	V	Y	N	W	N	H	I	I	L	L	V	S	D	D	H	E	G	R	A	A	Q	K	R	L	E	T	L	L	E	E	R	E	S	K	A	E	K	V	.	.	L	Q	F	D	P	G	T	K	N	V	T	A	L	L	M	E	A	R	E	L	E	A	R	V	I	I	L	S	A	.	.
Template Known Secondary structure												B											S	S															T	T	S	S							.	.					T	T		S											T	S	S									.	.
Template Predicted Secondary structure																																																	.	.																														.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	Q	D	T	C	K	A	I	G	I	I	S	N	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	D	D	A	A	T	V	Y	R	A	A	A	M	L	N
Template Known Secondary structure															T	T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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