Job Description P0A9S1 Confidence 100.00% Date Wed Jan 25 15:20:20 GMT 2012 Rank 20 Aligned Residues 278 % Identity 18% Template c3clhA_ PDB info PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori Resolution 2.40 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		T	A	W	F	G	R	G	A	V	G	A	L	T	D	E	V	K	R	R	G	Y	Q	K	A	L	I	V	T	D	K	T	L	V	Q	C	G	V	V	A	K	V	T	D	K	M	D	A	A	G	L	A	W	A	I	Y	D	G	V	V	P	N	P	T	I	T	V	V	K	E	G	L	G	V	F	Q	N	S	G	A	.
Query Conservation																																																																																	.
Alig confidence								.	.	.	.	.	.	.	.																						.																																												.
Template Conservation								.	.	.	.	.	.	.	.																						.
Template Sequence		K	V	F	L	G	E	.	.	.	.	.	.	.	.	L	P	E	I	K	L	K	Q	K	A	L	I	I	S	D	S	I	V	A	G	L	.	H	L	P	Y	L	L	E	R	L	K	A	L	E	V	R	V	C	V	I	E	S	G	E	K	Y	K	N	F	H	S	L	E	R	I	L	N	N	A	F	E	M	Q	L	N
Template Known Secondary structure		B				S	S	.	.	.	.	.	.	.	.							S	S												T	T	.	T						T	T				S									S	S	G	G	G		S														T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																						.
Template SS confidence
		14	.	.	.	.	.									20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
				89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	D	Y	L	I	A	I	G	G	G	S	P	Q	D	T	C	K	A	I	G	I	I	S	N	N	P	E	F	A	D	V	R	S	L	E	G	L	S	P	T	N	K	P	S	V	P	I	L	A	I	P	T	T	A	G	T	A	A	E	V	T	I	N	Y	V	I	T	D	E	E	K	R	R	K	F	V	C	V	D
Query Conservation		.	.
Alig confidence		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	H	S	L	M	I	A	L	G	G	G	V	I	S	D	M	V	G	F	A	S	S	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	G	I	D	F	I	N	I	P	T	T	L	L	A	Q	V	D	A	S	V	G	G	K	T	G	I	N	T	P	Y	G	K	N	L	I	G	S
Template Known Secondary structure		T	T								S														G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G										S						T	T	S	S	S								T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	D	I	P	Q	V	A	F	I	D	A	D	M	M	D	G	M	P	P	A	L	K	A	A	T	G	V	D	A	L	T	H	A	I	E	G	Y	I	T	R	G	A	W	A	L	T	D	A	L	H	I	K	A	I	E	I	I	A	G	A	L	R	G	S	V	A	G	D	K	D	A	G	E	E	M	A	L	G	Q
Query Conservation
Alig confidence		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Sequence		.	F	H	Q	P	K	A	V	Y	M	D	L	A	F	L	K	T	L	E	K	R	E	F	Q	A	G	V	A	E	I	I	K	M	A	V	C	F	D	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	E	R	L	E	T	.	.	K	D	L	K	D	C	L	E	E	V	I	F	Q	S
Template Known Secondary structure		.					S						T	T	S	G	G	G	S																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	S		T	T	T	S
Template Predicted Secondary structure		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template SS confidence
			147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																		.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.				.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		Y	V	A	G	M	G	F	S	N	V	G	L	G	L	V	H	G	M	A	H	P	L	G	A	F	Y	N	.	.	.	T	P	H	G	V	A	N	A	I	L	L	P	H	V	M	R	Y	N	A	D	F	T	G	E	K	Y	R	D	I	A	R	V	M	G	V	K	V	E	G	M	S	L	E	E	A	R	N	A	A	V
Query Conservation																													.	.	.
Alig confidence																													.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	I	K	A	Q	V	V	R	A	G	L	N	Y	G	H	T	F	G	H	A	I	E	K	E	T	D	Y	E	R	F	L	H	G	E	A	I	A	I	G	M	R	M	A	N	D	L	A	L	S	L	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	L	K	E	Y
Template Known Secondary structure											T	T	T	T	T	T											T	T	T	S	S																						T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.																						260	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.													.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	V	F	A	L	N	R	D	V	G	I	P	P	H	L	R	D	V	.	.	.	.	.	.	.	.	.	.	.	.	G	V	R	K	E	D	I	P	A	L	A	Q	A
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	R	I	E	N	L	L	K	K	F	D	L	I	F	H	Y	K	F	I	L	P	K	G	V	G	A	F	E	V	A	S	H	I	P	K	E	T	I	I	K	V	L	E	K
Template Known Secondary structure											T	T												S	S	S																	S	T	T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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