 |
Job Description | P0A9S1 | Confidence | 32.90% | Date | Wed Jan 25 15:20:20 GMT 2012 |
Rank | 312 | Aligned Residues | 116 |
% Identity | 9% | Template | c1gdhA_ |
PDB info |
PDB header:oxidoreductase(choh (d)-nad(p)+ (a)) | Chain: A: PDB Molecule:d-glycerate dehydrogenase; |
PDBTitle: crystal structure of a nad-dependent d-glycerate2 dehydrogenase at 2.4 angstroms resolution
|
Resolution | 2.40 Å |
|
 |
  |   |
12 | . | . | . | . | . | . | . | 20 | |
. | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |
|
|  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | F | G | R | G | A | V | G | A | . |
L | T | D | E | V | K | R | R | G | Y | Q | K | A | L | I | V | T | D | K | T | L | V | Q | C | G | V | V | . |
. |
. |
. |
. |
. |
. |
. |
A | K | V | T | D | K | M | D | A | A | G | L | A | W | A | I | Y | D | G | V | V | P | N | P | T | I | T | V | V | K | E | G | L | G | V |
Query Conservation |   |
  |   |
|   |
|   |
|   |   | . |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |
|
|
|   |   | . | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|
| . | . | . |
|   |   |   |   |
|
|
|   |   |
|   |   |
|
|   |   |   |   |
|
Template Sequence |   |
I | Y | G | F | G | S | I | G | Q | A | L | A | K | R | A | Q | G | F | D | M | D | . |
. |
I | D | Y | F | D | T | H | R | A | S | S | S | D | E | A | S | Y | Q | A | T | F | H | D | S | L | D | S | L | L | S | V | S | Q | F | . |
. |
. |
F | S | L | N | A | P | S | T | P | E | T | R | Y | F | F | N | K | A | T | I |
Template Known Secondary structure |   |
 |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  | . | . |  |  |  |  |
| S | S |
|
|
|  |  |  |  |  |  |  | T |
|  |  |
| S | S |  |  |  |  |  |  |  |
| S |  | . | . | . |  |  |  |
|
|
|
|
| T | T | T | T | T |
| B | S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|  | . | . | . |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
152 | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | |
|
. | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | |
|
|
. | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | Q | N | S | G | A | D | Y | L | I | A | I | G | G | G | S | P | Q | D | T | C | K | A | I | G | I | I | S | N | N | P | E | F | A | D | V | R | S | L | E | G | L | S | P | T | N | K | P | S | V |
Query Conservation |   |
  |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |
|
|   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |
|
|   |
|
|
|   |
|
|
|   |
|
|
|   |   |
|
|   |   |
|
|   |   |
|   |
|   |   |
|
|
|
|
|   |   |   |
|
|   |   |   |   |
|
|
Template Sequence |   |
K | S | L | P | Q | G | A | I | V | V | N | T | A | R | G | D | L | V | D | N | E | L | V | V | A | A | L | E | A | G | R | L | A | Y | A | G | F | D | V | F | A | G | E | P | N | I | N | E | G | Y |
Template Known Secondary structure |   |
T | T | S |
| T | T |  |  |  |  |  |
| S |
| G | G | G | B |
|  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  | S |
|
| T | T | T | T | S |
|
| T | T | G |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
227 | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|