Job Description P30143 Confidence 99.64% Date Thu Jan 5 11:46:07 GMT 2012 Rank 3 Aligned Residues 344 % Identity 15% Template c3lrcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) Resolution 4.00 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	G	G	L	T	S	F	Q	S	L	C	T	S	L	A	A	R	V	G	S	G	N	L	A	G	V	A	L	A	I	T	A	G	G	P	G	A	V	F	W	M	W	V	A	A	F	I	G	M	A	T	S	F	A	E	C	S	L	A	Q	L	Y	K	E	R	D	V	N	G	Q	F	R	G	G	P	A	W	Y	M
Query Conservation
Alig confidence																																						.																											.	.	.	.	.	.	.
Template Conservation																																						.																											.	.	.	.	.	.	.
Template Sequence		D	A	H	K	V	G	L	I	P	V	T	L	M	V	S	G	N	I	M	G	S	G	V	F	L	L	P	A	N	L	A	S	T	G	G	I	.	A	I	Y	G	W	L	V	T	I	I	G	A	L	G	L	S	M	V	Y	A	K	M	S	F	L	D	.	.	.	.	.	.	.	P	S	P	G	G	S	Y	A	Y	A
Template Known Secondary structure				S	S													T	T	S	S	S	S	T	T	T					T	T	S	S				.		S																						T	T		.	.	.	.	.	.	.			S	S		T	T	T	G	G
Template Predicted Secondary structure																																						.																											.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.								.	.	70	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.
Query SS confidence																																											.	.	.	.	.
Query Sequence		A	R	G	L	G	M	R	W	M	G	V	L	F	A	V	F	L	L	I	A	Y	G	I	I	F	S	G	V	Q	A	N	A	V	A	R	A	L	S	F	S	F	.	.	.	.	.	D	F	P	P	L	V	T	G	I	I	L	A	V	F	T	L	L	A	I	T	R	G	L	H	G	V	A	R	L	M	Q	G	F	V
Query Conservation																																											.	.	.	.	.
Alig confidence							.																				.																.	.	.	.	.
Template Conservation							.																				.
Template Sequence		R	R	C	F	G	.	P	F	L	G	Y	Q	T	N	V	L	Y	W	L	A	C	W	I	G	N	.	I	A	M	V	V	I	G	V	G	Y	L	S	Y	F	F	P	I	L	K	D	P	L	V	L	T	I	T	C	V	V	V	L	W	I	F	V	L	L	N	I	V	G	P	K	M	I	T	R	V	Q	A	V	A	T
Template Known Secondary structure		G	G	T	T		.													T	T	T	T				.								T	G	G	G	S	S	S	S					S	S	S																			S		S
Template Predicted Secondary structure							.																				.
Template SS confidence
		78	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	M	A	I	I	W	V	L	T	S	L	V	I	C	V	M	N	I	G	Q	L	P	H	V	I	W	S	I	F	E	S	A	F	G	W	Q	E	A	A	G	G	A	A	G	Y	T	L	S	Q	A	I	T	N	G	F	Q	R	S	M	F	S	N	E	A	G	M	G	S	T	P	N	A	A	A	A	A	A	S	W
Query Conservation
Alig confidence																											.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																											.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		V	L	A	L	I	P	I	V	G	I	A	V	F	G	W	F	W	F	R	G	E	T	Y	M	A	.	.	.	.	A	W	N	V	S	G	L	G	T	F	G	A	I	Q	S	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	T	L	W	S	F	I	G	V	E	S	A	S	V	A	A	G	V	V	.
Template Known Secondary structure																		S			S	S					.	.	.	.			S		S	S	S						T					.	.	.	.	.	.	.	.	.	.	.	.	.				S	T	T		T	T	G	G	G					G	G	G	S	.
Template Predicted Secondary structure																											.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.														.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	H	P	A	A	Q	G	I	V	Q	M	I	G	I	F	I	D	T	L	V	I	C	T	A	S	A	M	L	I	L	L	A	G	N	G	T	T	Y	M	P	L	E	G	I	Q	L	I	Q	K	A	M	R	V	L	M	G	S	W	G	A	E	F	V	T	L	V	V	I	L	F	A	F	S	S	I	V	A	N	Y
Query Conservation
Alig confidence		.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	K	N	P	K	R	N	V	P	I	A	T	I	G	G	V	L	I	A	A	V	C	Y	V	L	S	T	T	A	I	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	P	N	T	A	G	A	I	V	S	F	C	A	A	A	G	C	L	G	S	L	G	G	W	T
Template Known Secondary structure		.	S	S																								T	T				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T										T
Template Predicted Secondary structure		.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.																							.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.										.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.
Query Sequence		I	Y	A	E	N	N	L	F	F	L	R	L	N	N	.	.	.	.	.	.	.	.	.	P	K	A	I	W	C	L	R	I	C	T	F	A	T	V	I	G	G	T	L	L	S	L	P	L	M	W	Q	L	A	D	I	I	M	A	C	M	A	I	T	N	L	T	A	I	L	L	L	S	P	V	V	H	T	I	A	S
Query Conservation																.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	A	G	Q	T	A	K	A	A	A	D	D	G	L	F	P	P	I	F	A	R	V	N	K	A	G	T	P	V	A	G	L	I	I	V	G	I	L	M	T	I	F	Q	L	S	S	I	S	P	N	A	T	K	E	F	G	L	V	S	S	V	S	V	I	F	T	L	V	P	Y	L	Y	T	C	A	A	L	L	L
Template Known Secondary structure							T	T	S	S	T	T	T	S	S		S									S	S	S	S																	T	T	S	S	S		S	S	S	S	S			S	S	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	L	R	Q	R	K	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	H	G	H	F	G	K	A
Template Known Secondary structure		T		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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