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Job DescriptionP30143
Confidence94.90%DateThu Jan 5 11:46:07 GMT 2012
Rank8Aligned Residues416
% Identity11%Templatec3hfxA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter
Resolution3.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  PDFFSFINSVLWGS. . VMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAG
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Template Sequence  NVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLG. . . . . . . . . NEPPEFSTASWIFMMFASCTSAAVLFW
Template Known Secondary structure  SSSTTS
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Query Sequence  VAL. . . . . . . . . . . AITAGGPGAVFWMWVAAFI. . GMATSFAECSLA. . . . . QLYKERDVNGQFRGGPAWYMARGLGMRW
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Template Sequence  GSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGL
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   108.110.........120.........130.........140.........150.........160.........170.........180.......
 
   142.......150......... 160.........170.........180.........190..... ....200.........
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Query Sequence  MGVLFAVFLLIAYGIIFS. . . GVQANAVARALSFSFDFPPLVTGIILAVFTLLAITR. . . . . . . . . GLHGVARLMQGFVP
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Template Sequence  FGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSF
Template Known Secondary structure  TTSTT


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   188.190.........200.........210.........220.........230.........240.........250.........260.......
 
   210.........220...... ...230......... 240.........250.........260.........270.........280..
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Query Sequence  LMAIIWVLTSLVICVMN. . IGQLPHVIWSIFE. . . . . SAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAA
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Template Sequence  LMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIF. . . . . . . . . . . . .
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   268.270.........280.........290.........300.........310.........320.........330....
 
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Query Sequence  AAAASWPPHPAAQGIVQ. . . . MIGIFIDTLVICTASAMLILLAGNGTT. . YMPLEGIQLIQKAMRVLMG. . SWGAEFVTL
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Template Sequence  . LARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFI
Template Known Secondary structure  .T
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   335....340.........350.........360.........370.........380.........390.........400.........410...
 
   355....360.........370.........380.........390... ......400.........410.........420.........
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Query Sequence  VVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICT. . . . . FATVIGGTLLSLPLMWQLADIIMACMAITNLTAILL
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Template Sequence  LCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLS
Template Known Secondary structure  TTS
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   414.....420.........430.........440.........450.........460.........470.........480.........490...
 
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Query Sequence  LSPVVHTIASD
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Template Sequence  FIKDAKQNWKD
Template Known Secondary structure  T


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   494.....500....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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