Job Description P30143 Confidence 94.90% Date Thu Jan 5 11:46:07 GMT 2012 Rank 8 Aligned Residues 416 % Identity 11% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		P	D	F	F	S	F	I	N	S	V	L	W	G	S	.	.	V	M	I	Y	L	L	F	G	A	G	C	W	F	T	F	R	T	G	F	V	Q	F	R	Y	I	R	Q	F	G	K	S	L	K	N	S	I	H	P	Q	P	G	G	L	T	S	F	Q	S	L	C	T	S	L	A	A	R	V	G	S	G	N	L	A	G
Query Conservation																.	.
Alig confidence																.	.																													.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.
Template Sequence		N	V	V	I	N	A	V	F	S	Y	V	T	N	V	W	G	W	A	F	E	W	Y	M	V	V	M	L	F	G	W	F	W	L	V	F	G	P	Y	A	K	K	R	L	G	.	.	.	.	.	.	.	.	.	N	E	P	P	E	F	S	T	A	S	W	I	F	M	M	F	A	S	C	T	S	A	A	V	L	F	W
Template Known Secondary structure																																					S	S	S	T	T	S		S	S	.	.	.	.	.	.	.	.	.	S	S			S	S											T					S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80										.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		80	.	.												.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.																				.	.													.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.																				.	.													.	.	.	.	.
Query Sequence		V	A	L	.	.	.	.	.	.	.	.	.	.	.	A	I	T	A	G	G	P	G	A	V	F	W	M	W	V	A	A	F	I	.	.	G	M	A	T	S	F	A	E	C	S	L	A	.	.	.	.	.	Q	L	Y	K	E	R	D	V	N	G	Q	F	R	G	G	P	A	W	Y	M	A	R	G	L	G	M	R	W
Query Conservation					.	.	.	.	.	.	.	.	.	.	.																				.	.													.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																				.	.													.	.	.	.	.
Template Conservation
Template Sequence		G	S	I	E	I	Y	Y	Y	I	S	T	P	P	F	G	L	E	P	N	S	T	G	A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L
Template Known Secondary structure												S		S	T	T			T	T																T	S																				T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.										.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.																																					.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.																																					.	.	.	.	.	.	.	.	.
Query Sequence		M	G	V	L	F	A	V	F	L	L	I	A	Y	G	I	I	F	S	.	.	.	G	V	Q	A	N	A	V	A	R	A	L	S	F	S	F	D	F	P	P	L	V	T	G	I	I	L	A	V	F	T	L	L	A	I	T	R	.	.	.	.	.	.	.	.	.	G	L	H	G	V	A	R	L	M	Q	G	F	V	P
Query Conservation																				.	.	.																																					.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F
Template Known Secondary structure																																		T	T	S	T	T				T																				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.						240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																			.	.														.	.	.	.	.
Query SS confidence																			.	.														.	.	.	.	.
Query Sequence		L	M	A	I	I	W	V	L	T	S	L	V	I	C	V	M	N	.	.	I	G	Q	L	P	H	V	I	W	S	I	F	E	.	.	.	.	.	S	A	F	G	W	Q	E	A	A	G	G	A	A	G	Y	T	L	S	Q	A	I	T	N	G	F	Q	R	S	M	F	S	N	E	A	G	M	G	S	T	P	N	A	A
Query Conservation																			.	.														.	.	.	.	.
Alig confidence																			.	.														.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																																				T					S	S								T											T								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.					300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.	.	.
Predicted Secondary structure																			.	.	.	.																												.	.																				.	.
Query SS confidence																			.	.	.	.																												.	.																				.	.
Query Sequence		A	A	A	A	S	W	P	P	H	P	A	A	Q	G	I	V	Q	.	.	.	.	M	I	G	I	F	I	D	T	L	V	I	C	T	A	S	A	M	L	I	L	L	A	G	N	G	T	T	.	.	Y	M	P	L	E	G	I	Q	L	I	Q	K	A	M	R	V	L	M	G	.	.	S	W	G	A	E	F	V	T	L
Query Conservation																			.	.	.	.																												.	.																				.	.
Alig confidence		.																	.	.	.	.																												.	.																				.	.
Template Conservation		.
Template Sequence		.	L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I
Template Known Secondary structure		.				T		S	S																																			T	T	S								G	G	G												T	S	S	S	T	T
Template Predicted Secondary structure		.
Template SS confidence
			335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.						.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.
Query SS confidence																																									.	.	.	.	.
Query Sequence		V	V	I	L	F	A	F	S	S	I	V	A	N	Y	I	Y	A	E	N	N	L	F	F	L	R	L	N	N	P	K	A	I	W	C	L	R	I	C	T	.	.	.	.	.	F	A	T	V	I	G	G	T	L	L	S	L	P	L	M	W	Q	L	A	D	I	I	M	A	C	M	A	I	T	N	L	T	A	I	L	L
Query Conservation																																									.	.	.	.	.
Alig confidence																																									.	.	.	.	.
Template Conservation
Template Sequence		L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S
Template Known Secondary structure																					T	T	S		S	S	S	S	S		S	S		S	T	T																				S	S
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
		430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	P	V	V	H	T	I	A	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.