Job Description P30143 Confidence 99.91% Date Thu Jan 5 11:46:07 GMT 2012 Rank 1 Aligned Residues 357 % Identity 12% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	G	G	L	T	S	F	Q	S	L	C	T	S	L	A	A	R	V	G	S	G	N	L	A	G	V	A	L	A	I	T	A	G	G	P	G	A	V	F	W	M	W	V	A	A	F	I	G	M	A	T	S	F	A	E	C	S	L	A	Q	L	Y	K	E	R	D	V	N	G	Q	F	R	G	G	P	A	W	Y	M
Query Conservation
Alig confidence																																																																	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.
Template Sequence		K	N	K	K	L	S	L	W	E	A	V	S	M	A	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	I	.	.	.	.	.	.	.	V	S	N	A	G	P	I	A	F	I
Template Known Secondary structure						B																		T	T	T	S									G	G	G																								T	T		.	.	.	.	.	.	.			T	T	T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		A	R	G	L	G	M	R	W	M	G	V	L	F	A	V	F	L	L	I	A	Y	G	I	I	F	S	G	V	Q	A	N	A	V	A	R	A	L	S	F	S	F	D	F	P	.	.	.	.	.	P	L	V	T	G	I	I	L	A	V	F	T	L	L	A	I	T	R	G	L	H	G	V	A	R	L	M	Q	G	F	V
Query Conservation																																														.	.	.	.	.
Alig confidence																										.																				.	.	.	.	.
Template Conservation																										.
Template Sequence		H	K	A	I	G	D	N	I	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	.	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F	F	I	V
Template Known Secondary structure							S	S																		.																T	T																										T
Template Predicted Secondary structure																										.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	M	A	I	I	W	V	L	T	S	L	V	I	C	V	M	N	I	G	Q	L	P	H	V	I	W	S	I	F	E	S	A	F	G	W	Q	E	A	A	G	G	A	A	G	Y	T	L	S	Q	A	I	T	N	G	F	Q	R	S	M	F	S	N	E	A	G	M	G	S	T	P	N	A	A	A	A	A	A	S	W
Query Conservation
Alig confidence																								.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																								.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		L	V	K	L	L	I	L	G	L	F	I	F	A	G	L	I	T	I	H	P	S	Y	.	.	.	.	.	.	.	V	I	P	D	L	A	P	S	A	V	S	G	M	I	F	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	.
Template Known Secondary structure																					G	G	G	.	.	.	.	.	.	.	T	S				S												.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G	G	G	T							T	T	G	G	G	B	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.														.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	H	P	A	A	Q	G	I	V	Q	M	I	G	I	F	I	D	T	L	V	I	C	T	A	S	A	M	L	I	L	L	A	G	N	G	T	T	Y	M	P	L	E	G	I	Q	L	I	Q	K	A	M	R	V	L	M	G	S	W	G	A	E	F	V	T	L	V	V	I	L	F	A	F	S	S	I	V	A	N	Y
Query Conservation
Alig confidence		.																																						.
Template Conservation		.																																						.
Template Sequence		.	E	N	P	K	K	N	V	P	R	A	I	F	I	S	I	L	I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	.	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I
Template Known Secondary structure		.	S	S																													T	T	S					.				T	G	G	G
Template Predicted Secondary structure		.																																						.
Template SS confidence
			215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.												.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	Y	A	E	N	N	L	F	F	L	R	L	N	N	P	K	A	I	W	.	.	.	.	.	.	.	.	.	.	.	C	L	R	I	C	T	F	A	T	V	I	G	G	T	L	L	S	L	P	L	M	W	Q	L	A	D	I	I	M	A	C	M	A	I	T	N	L	T	A	I	L	L	L	S	P	V	V	H	T	I
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	G	G	A	N	V	A	Y	S	L	A	K	D	G	E	L	P	E	F	F	E	R	K	V	W	F	K	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R
Template Known Secondary structure		T	T	T											S	S			S	S			T	T	S			S		T																	S																											T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		438	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	D	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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