Job Description P30143 Confidence 98.99% Date Thu Jan 5 11:46:07 GMT 2012 Rank 4 Aligned Residues 382 % Identity 10% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	I	R	Q	F	G	K	S	L	K	N	S	I	H	P	Q	P	G	G	L	T	S	F	Q	S	L	C	T	S	L	A	A	R	V	G	S	G	N	L	A	G	V	A	L	A	I	T	A	G	G	P	G	A	V	F	W	M	W	V	A	A	F	I	G	M	A	T	S	F	A	E	C	S	L	A	Q	L	Y	K
Query Conservation
Alig confidence																																																																								.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	A	G	K	S	L	P	W	W	A	V	G	A	S	L	I	A	A	N	I	S	A	E	Q	F	I	G	M	S	G	S	G	Y	S	I	G	L	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	V	G	K	.	.	.	Y	F	L	P	I	F	I
Template Known Secondary structure																				S																	S					T									T		G	G	G																	.	.	.		T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	D	V	N	G	Q	F	R	G	G	P	A	W	Y	M	A	R	G	L	G	M	R	W	M	G	V	L	F	A	V	F	L	L	I	A	Y	G	I	I	F	S	G	V	Q	A	N	A	V	A	R	A	L	S	F	S	F	D	F	P	P	L	V	T	G	I	I	L	A	V	F	T	L	L	A	I	T	R	G	L
Query Conservation
Alig confidence							.	.	.	.	.														.
Template Conservation							.	.	.	.	.														.
Template Sequence		E	K	G	I	Y	.	.	.	.	.	T	I	P	E	F	V	E	K	R	F	N	K	K	.	L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	I	P	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	V	V	W
Template Known Secondary structure			T	T			.	.	.	.	.	S									T				.																T																	T	T																	T	T				S
Template Predicted Secondary structure							.	.	.	.	.														.
Template SS confidence
		108	.	110	.	.						.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	V	A	R	L	M	Q	G	F	V	P	L	M	A	I	I	W	V	L	T	S	L	V	I	C	V	M	N	I	G	Q	L	P	H	V	I	W	S	I	F	E	S	A	F	G	W	Q	E	A	A	G	G	A	A	G	Y	T	L	S	Q	A	I	T	N	G	F	Q	R	S	M	F	S	N	E	A	G	M	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	V	I	Q	V	F	F	L	V	L	G	G	F	M	T	T	Y	M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N
Template Known Secondary structure																											T	T	S														G	G	G	G		S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.													.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	N	A	A	A	A	A	A	S	W	P	P	H	P	A	A	Q	G	I	V	Q	M	I	G	I	F	I	D	T	L	V	I	C	T	A	S	A	M	L	I	.	.	.	.	.	.	.	.	.	.	.	.	L	L	A	G	N	G	T	T	Y	M	P	L	E	G	I	Q	L	I	Q	K	A	M	R	V	L	M	G
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Y	I	I	Q	R	T	L	A	A	K	S	V	S	E	A	Q	K	G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P
Template Known Secondary structure										S	S	S																			G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.									.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.										.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Query Sequence		S	W	G	A	E	F	V	T	L	V	V	I	L	F	A	F	S	S	I	V	A	N	Y	I	Y	A	E	N	N	L	F	F	L	.	.	.	.	.	.	.	.	R	L	N	N	P	K	A	I	W	C	L	R	I	C	T	F	A	T	V	I	G	G	T	L	L	S	.	.	.	.	.	.	.	.	.	L	P	L	M
Query Conservation																																			.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	V	K	G	V	V	F	A	A	L	A	A	A	I	V	S	S	L	A	S	M	L	N	S	T	A	T	I	F	T	M	D	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I
Template Known Secondary structure		T	T																																T							S		S		S	S																					G	G	G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	L	A	D	I	I	M	A	C	M	A	I	T	N	L	T	A	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	E	Y	T	G	L	V	S	P	G	I	L	A	V	F	L	L	G	L	F
Template Known Secondary structure						T	T	T
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.