Job Description P30143 Confidence 96.03% Date Thu Jan 5 11:46:07 GMT 2012 Rank 7 Aligned Residues 423 % Identity 14% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		P	D	F	F	S	F	I	N	S	V	L	W	G	S	.	.	V	M	I	Y	L	L	F	G	A	G	C	W	F	T	F	R	T	G	F	V	Q	F	R	Y	I	R	Q	F	G	K	S	L	K	N	S	I	H	P	Q	P	G	G	L	T	S	F	Q	S	L	C	T	S	L	A	A	R	V	G	S	G	N	L	A	G
Query Conservation																.	.
Alig confidence																.	.																												.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.
Template Sequence		T	N	F	A	S	S	A	L	S	A	V	V	D	N	L	G	W	A	F	I	L	F	G	T	V	F	V	F	F	I	V	V	I	A	A	S	K	F	G	T	I	R	L	.	.	.	.	.	.	.	G	R	I	D	E	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y
Template Known Secondary structure								T	T							T																					S	G	G	G	G			S	.	.	.	.	.	.	.	S	S	T	T				S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		80	.	.			.	.	.	.	.	.	.												90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.
Predicted Secondary structure					.	.								.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.
Query SS confidence					.	.								.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.
Query Sequence		V	A	L	.	.	A	I	T	A	G	G	P	.	.	.	.	.	.	.	.	.	.	.	G	A	V	F	W	M	W	V	A	A	F	I	G	M	A	T	S	F	A	E	C	S	L	A	Q	L	Y	K	E	R	D	V	N	G	Q	F	R	G	G	P	A	W	Y	M	A	R	G	L	G	M	R	.	.	.	.	W	M
Query Conservation					.	.								.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.
Alig confidence					.	.								.	.	.	.	.	.	.	.	.	.	.																	.																					.	.													.	.	.	.
Template Conservation																																									.																					.	.
Template Sequence		G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	.	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	.	.	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L
Template Known Secondary structure												T			T	T	S		S	S														S							.												T	T	T	S				S	S	.	.	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S
Template Predicted Secondary structure																																									.																					.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.									.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																				.	.	.																																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.																																				.	.	.	.	.	.	.	.
Query Sequence		G	V	L	F	A	V	F	L	L	I	A	Y	G	I	I	F	S	G	.	.	.	V	Q	A	N	A	V	A	R	A	L	S	F	S	F	D	F	P	P	L	V	T	G	I	I	L	A	V	F	T	L	L	A	I	T	R	.	.	.	.	.	.	.	.	G	L	H	G	V	A	R	L	M	Q	G	F	V	P	L	M
Query Conservation																				.	.	.																																				.	.	.	.	.	.	.	.
Alig confidence																				.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L
Template Known Secondary structure		S																															T	T	T	S																			T	T	G	G	G	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		212	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.									.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure										.	.																										.	.	.	.	.	.	.	.
Query SS confidence										.	.																										.	.	.	.	.	.	.	.
Query Sequence		A	I	I	W	V	L	T	S	.	.	L	V	I	C	V	M	N	I	G	Q	L	P	H	V	I	W	S	I	F	E	S	A	F	G	W	.	.	.	.	.	.	.	.	Q	E	A	A	G	G	A	A	G	Y	T	L	S	Q	A	I	T	N	G	F	Q	R	S	M	F	S	N	E	A	G	M	G	S	T	P	N	A
Query Conservation										.	.																										.	.	.	.	.	.	.	.
Alig confidence										.	.																										.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S																									T			T	T	T	T	S	S								T	T										T	T											.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	A	A	A	S	W	P	P	H	P	A	A	Q	G	I	V	Q	M	I	G	I	F	I	D	T	L	V	I	C	T	A	S	A	M	L	I	L	L	A	G	N	G	T	T	Y	M	P	L	E	G	I	Q	L	I	Q	K	A	M	R	V	L	M	G	S	W	G	A	E	F	V	T	L	V	V	I	L	F	A	F
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		I	S	R	G	R	S	I	.	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I
Template Known Secondary structure			T	T	T				.																																	T						T	T		S										T	S	T	T
Template Predicted Secondary structure									.
Template SS confidence
		388	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.									.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.
Query Sequence		S	S	I	V	A	N	Y	I	Y	A	E	N	N	L	F	F	L	R	L	N	N	P	K	A	I	W	C	L	R	I	C	T	.	.	.	.	.	.	.	.	F	A	T	V	I	G	G	T	L	L	S	L	P	L	M	W	Q	L	A	D	I	I	M	A	C	M	A	I	T	N	L	T	A	I	L	L	L	S	P	V
Query Conservation																																		.	.	.	.	.	.	.	.
Alig confidence										.	.	.																						.	.	.	.	.	.	.	.
Template Conservation										.	.	.
Template Sequence		T	S	A	D	S	A	S	T	.	.	.	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D
Template Known Secondary structure										.	.	.						T	T	T	T		S	S																									G	G	G
Template Predicted Secondary structure										.	.	.
Template SS confidence
		467	.	.	470	.	.	.	.				.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	T	I	A	S	D	Y	L	R	Q	R	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		544	.	.	.	.	.	550	.	.	.	.	.	.	.