Job Description P0A784 Confidence 95.37% Date Thu Jan 5 11:05:03 GMT 2012 Rank 48 Aligned Residues 126 % Identity 13% Template c4ktqA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:protein (large fragment of dna polymerase i); PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	M	T	G	L	D	P	E	R	D	R	I	I	E	I	A	T	L	V	T	D	A	N	L	N	I	L	A	E	G	P	T	I	A	V	H	Q	S	D	E	Q	L	A	L	M	D	D	W	N	V	R	T	H	T	A	S	G	L	V	E	R	V	K	A	S	T	M	G	D	R	E	A	E	L	A	T	L	E	F
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	E	A	P	W	P	P	P	E	G	A	F	V	G	F	V	L	S	R	K	E	P	M	W	A	D	L	L	A	L	A	A	A	R	G	G	R	V	H	R	A	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y
Template Known Secondary structure							S				S	S								S	S	S		T	T	T											T	T						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																																			.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		L	K	Q	W	V	P	A	G	K	S	P	I	C	G	N	S	I	G	Q	D	R	R	F	L	F	K	Y	M	P	E	L	E	A	Y	F	H	Y	R	Y	L	D	V	S	T	L	K	E	L	A	.	.	.	R	R	W	K	P	E	I	L	D	G	F	T	K	Q	G	T	H	Q	A	M	D	D	I	R	E	S	V	A
Query Conservation																																																			.	.	.
Alig confidence						.	.	.	.																			.	.	.									.												.	.	.
Template Conservation						.	.	.	.																			.	.	.									.
Template Sequence		K	A	L	R	.	.	.	.	D	L	K	E	A	R	G	L	L	A	K	D	L	S	V	L	A	L	.	.	.	R	E	G	L	G	L	P	P	.	G	D	D	P	M	L	L	A	Y	L	L	D	P	S	N	T	T	P	E	G	V	A	R	R	Y	G	G	E	W	T	E	E	A	G	E	R	A	A	L	S	E	R
Template Known Secondary structure				T	T	.	.	.	.	S		S	S	B		S	T	T										.	.	.		T	T					B	.													T	T												S					S		T	T	T	T
Template Predicted Secondary structure						.	.	.	.																			.	.	.									.
Template SS confidence
		340	.	.	.					.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.				.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	A	Y	Y	R	E	H	F	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	A	N	L	W	G	R	L	E	G
Template Known Secondary structure										T	T	T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions