Job Description P0A784 Confidence 98.83% Date Thu Jan 5 11:05:03 GMT 2012 Rank 24 Aligned Residues 175 % Identity 17% Template c2p51A_ PDB info PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:spcc18.06c protein; PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit Resolution 1.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																						.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Query Sequence		A	N	E	N	N	L	I	W	I	D	L	E	M	T	G	L	D	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	R	I	I	E	I	A	T	L	V	T	D	A	N	L	N	I	L	A	E	G	P	T	I	A	V	H	.	Q	S	D	E	Q	L	A	L	M	D	D
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation
Template Sequence		I	E	R	Y	P	V	V	S	M	D	T	E	F	P	G	V	V	A	R	P	L	G	V	F	K	S	S	D	D	Y	H	Y	Q	T	L	R	A	N	V	D	S	L	K	I	I	Q	I	G	L	A	L	S	D	E	E	G	N	A	P	V	E	A	C	T	W	Q	F	N	F	T	F	N	L	Q	D	D	M	Y	A	P
Template Known Secondary structure		T	T	T	S																		S			S	S	S															S												T	T	S				T	T		S						B				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		61	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.													.
Predicted Secondary structure														.																																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	N	V	R	T	H	T	A	S	G	L	V	.	E	R	V	K	A	S	T	M	G	D	R	E	A	E	L	A	T	L	E	F	L	K	Q	W	V	P	A	G	K	S	P	I	C	G	N	S	I	G	Q	D	R	R	F	L	F	K	Y	M	P	E	L	E	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	F
Query Conservation														.																																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																				.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.
Template Sequence		E	S	I	E	L	L	T	K	S	G	I	D	F	K	K	H	Q	E	V	G	I	E	P	A	D	F	A	E	L	L	I	G	.	.	S	G	L	V	L	Q	E	E	V	T	W	I	T	F	H	S	G	Y	D	F	A	Y	L	L	K	A	M	T	Q	I	P	L	P	A	E	Y	E	E	F	Y	K	I	L	C	I	Y
Template Known Secondary structure										T	T											B											T	.	.	T	T	S	S	S		T	T						S	S															S				S	S
Template Predicted Secondary structure																																		.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.													.
Query SS confidence																				.	.	.	.	.													.
Query Sequence		H	Y	R	Y	L	D	V	S	T	L	K	E	L	A	R	R	W	K	.	.	.	.	.	P	E	I	L	D	G	F	T	K	Q	G	T	.	H	Q	A	M	D	D	I	R	E	S	V	A	E	L	A	Y	Y	R	E	H	F	I
Query Conservation																				.	.	.	.	.													.
Alig confidence																				.	.	.	.	.													.
Template Conservation
Template Sequence		F	P	K	N	Y	D	I	K	Y	I	M	K	S	V	L	N	N	S	K	G	L	Q	D	I	A	D	D	L	Q	I	H	R	I	G	P	Q	H	Q	A	G	S	D	A	L	L	T	A	R	I	F	F	E	I	R	S	R	Y	F
Template Known Secondary structure		S	S	S									T	T	T	T													T	T					S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions