Job Description P0A784 Confidence 98.36% Date Thu Jan 5 11:05:03 GMT 2012 Rank 26 Aligned Residues 112 % Identity 22% Template c2gv9B_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase Resolution 2.68 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.				.	.						.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure											.	.	.			.	.	.	.	.						.	.
Query SS confidence											.	.	.			.	.	.	.	.						.	.
Query Sequence		N	L	I	W	I	D	L	E	M	.	.	.	T	G	.	.	.	.	.	L	D	P	E	R	.	.	D	R	I	I	E	I	A	T	L	V	T	D	A	N	L	N	I	L	A	E	G	P	T	I	A	V	H	Q	S	D	E	Q	L	A	L	M	D	D	W	N	V	R	T	H	T	A	S	G	L	V	E	R	V	K
Query Conservation											.	.	.			.	.	.	.	.						.	.
Alig confidence											.	.	.			.	.	.	.	.						.	.																																											.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.
Template Sequence		K	L	M	C	F	D	I	E	C	K	A	G	G	E	D	E	L	A	F	P	V	A	G	H	P	E	D	L	V	I	Q	I	S	C	L	L	Y	D	L	S	T	T	A	L	E	H	V	L	L	F	S	L	G	S	C	D	L	P	E	S	H	L	N	E	L	A	A	R	.	.	.	.	.	G	L	P	T	P	V	V
Template Known Secondary structure														S	S		T	T	S				T	T	S	T	T	S												T	T	T												S															T	.	.	.	.	.	T
Template Predicted Secondary structure																																																																						.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430						.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		A	S	T	M	G	D	R	E	A	E	L	A	T	L	E	F	L	K	Q	W	V	P	A	G	K	S	P	I	C	G	N	S	I	G	.	Q	D	R	R	F	L	F	K	Y	M	P	E	L	E	A	Y
Query Conservation																																				.
Alig confidence																								.	.	.										.
Template Conservation																								.	.	.
Template Sequence		L	E	F	D	S	E	F	E	M	L	L	A	F	M	T	L	V	K	Q	Y	G	P	.	.	.	E	F	V	T	G	Y	N	I	I	N	F	D	W	P	F	L	L	A	K	L	T	D	I	Y	K	V
Template Known Secondary structure					S	S																		.	.	.	S					S	S	T	T	T	T											T	T	T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.				460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions