Phyre 2 alignment of P27859 with c1nfgA

Job Description P27859
Confidence 98.53% Date Thu Jan 5 11:44:22 GMT 2012

Rank 99 Aligned Residues 256

% Identity 13% Template c1nfgA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:d-hydantoinase; PDBTitle: structure of d-hydantoinase

Resolution 2.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.					10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure										.	.	.	.																											.	.	.
Query SS confidence										.	.	.	.																											.	.	.
Query Sequence	M	F	D	I	G	V	N	L	T	.	.	.	.	S	S	Q	F	A	K	D	R	D	D	V	V	A	C	A	F	D	A	G	V	N	G	L	L	I	T	.	.	.	G	T	N	L	R	E	S	Q	Q	A	Q	K	L	A	R	Q	Y	S	S	C	W	S	T	A	G	V	H	P	H	D	S	S	Q	W	Q	A	A	T
Query Conservation										.	.	.	.																											.	.	.
Alig confidence										.	.	.	.																											.	.	.
Template Conservation
Template Sequence	G	I	D	V	H	T	H	V	E	T	V	S	F	N	T	Q	S	A	D	T	F	A	T	A	T	V	A	A	A	C	G	G	T	T	T	I	V	D	F	C	Q	Q	D	R	G	H	S	L	A	E	A	V	A	K	W	D	G	M	A	G	G	K	S	A	I	D	Y	G	Y	H	I	I	V	L	D	P	T	D	S	V
Template Known Secondary structure									S				T	T				S													T	T												T	T	S														T	T	T		S	S									S	S
Template Predicted Secondary structure
Template SS confidence
	53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.

	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.																																																		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	E	A	I	I	E	L	A	A	Q	P	E	V	V	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	C	G	L	D	F	N	R	N	F	S	T	P	E
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	E	E	L	E	V	L	P	D	L	G	I	T	S	F	V	F	M	A	Y	R	G	M	N	M	I	D	D	V	T	L	L	K	T	L	D	K	A	V	K	T	G	S	L	V	M	V	H	A	E	N	G	D	A	A	D	Y	L	R	D	K	F	V	A	E	G	K	T	A	P	I	Y	H	A	L	S	R	P	P	R
Template Known Secondary structure				T	T	T	G	G	G	G	T			B			B	S	S	S	T	T	T	T	B																	T		B				B																	T	T			S	T						T	S
Template Predicted Secondary structure
Template SS confidence
	133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

	105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																														.	.																			.
Query SS confidence																														.	.																			.
Query Sequence	E	Q	E	R	A	F	V	A	Q	L	R	I	A	A	D	L	N	M	P	V	F	M	H	C	R	D	A	H	E	.	.	R	F	M	T	L	L	E	P	W	L	D	K	L	P	G	A	V	L	.	H	C	F	T	G	T	R	E	E	M	Q	A	C	V	A	H	G	I	Y	I	G	I	T	G	W	V	C	D	E	R
Query Conservation																														.	.																			.
Alig confidence																														.	.																			.
Template Conservation
Template Sequence	V	E	A	E	A	T	A	R	A	L	A	L	A	E	I	V	N	A	P	I	Y	I	V	H	V	T	C	E	E	S	L	E	E	V	M	R	A	K	S	R	G	V	R	A	L	A	E	T	C	T	H	Y	L	Y	L	T	K	E	D	L	E	R	P	D	F	E	G	A	K	Y	V	F	T	P	P	A	R	A	K	K
Template Known Secondary structure																	T										S														T									G	G	G	G	T			G	G	G	G	G		T	T	T	G	G	G	G	G			S	S
Template Predicted Secondary structure
Template SS confidence
	214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.									.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.
Query Sequence	R	G	L	E	L	R	E	L	L	P	L	I	P	A	E	K	L	L	I	E	T	D	A	P	Y	L	L	P	R	D	.	.	.	.	.	.	.	.	L	T	P	K	P	S	S	R	R	N	E	P	A	H	L	P	H	I	L	Q	R	I	A	H	W	R	G	E	D	A	A	W	L	A	A	T	T	D	A	N	V	K
Query Conservation																															.	.	.	.	.	.	.	.
Alig confidence														.	.																.	.	.	.	.	.	.	.																										.
Template Conservation														.	.																																																	.
Template Sequence	D	H	D	V	L	W	N	A	L	R	N	G	V	.	.	F	E	T	V	S	S	D	H	C	S	W	L	F	K	G	H	K	D	R	G	R	N	D	F	R	A	I	P	N	G	A	P	G	V	E	E	R	L	M	M	V	Y	Q	G	V	N	E	G	.	R	I	S	L	T	Q	F	V	E	L	V	A	T	R	P	A
Template Known Secondary structure											T	T		.	.		S						B					T	T	T	T	T	T	T	T	T	T		G	G	G	S				B			T	T	T											T	T	.	S	S										T
Template Predicted Secondary structure														.	.																																																	.
Template SS confidence
	294	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

	254	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	L	F	G	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	V	F	G	M	F
Template Known Secondary structure			T	T		T
Template Predicted Secondary structure
Template SS confidence
	371	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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