Job Description P45757 Confidence 99.97% Date Wed Jan 25 15:20:55 GMT 2012 Rank 8 Aligned Residues 225 % Identity 12% Template c3qo6B_ PDB info PDB header:photosynthesis Chain: B: PDB Molecule:protease do-like 1, chloroplastic; PDBTitle: crystal structure analysis of the plant protease deg1 Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.
Predicted Secondary structure																												.																												.	.																		.	.	.	.	.
Query SS confidence																												.																												.	.																		.	.	.	.	.
Query Sequence		R	F	P	F	H	L	A	N	H	N	K	D	A	A	I	N	I	L	I	I	F	I	S	I	G	S	.	I	I	F	N	V	N	Y	F	H	T	T	I	V	K	N	G	Q	I	I	N	Q	P	T	N	A	F	Q	.	.	S	D	F	S	L	A	A	L	W	R	N	E	N	H	A	G	V	.	.	.	.	.	K	D
Query Conservation																												.																												.	.																		.	.	.	.	.
Alig confidence									.	.																		.																												.	.																		.	.	.	.	.
Template Conservation									.	.
Template Sequence		T	F	D	A	K	V	V	.	.	G	F	D	Q	D	K	D	V	A	V	L	R	I	D	A	P	K	N	K	L	R	P	I	P	V	G	V	S	A	D	L	L	V	G	Q	K	V	F	A	I	G	N	P	F	G	L	D	H	T	L	T	T	G	V	I	S	G	L	R	R	E	I	S	S	A	A	T	G	R	P	I
Template Known Secondary structure									.	.				T	T	T	T										G	G	G						B			S	T	T			T	T									G	G	G		T	T																	S	S	S	S
Template Predicted Secondary structure									.	.
Template SS confidence
		190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																.	.	.	.	.
Query SS confidence																.	.	.	.	.
Query Sequence		A	N	P	V	A	V	N	Q	E	T	P	K	L	S	.	.	.	.	.	I	A	L	N	G	I	V	L	T	S	N	D	E	T	S	F	V	L	I	N	E	G	S	E	Q	K	R	Y	S	L	N	E	A	L	E	S	A	P	G	T	F	I	R	K	I	N	K	T	S	V	V	F	E	T	H	G	H	Y	E	K	V
Query Conservation																.	.	.	.	.
Alig confidence																.	.	.	.	.													.	.	.	.											.	.																		.	.	.	.	.	.
Template Conservation																																	.	.	.	.											.	.																		.	.	.	.	.	.
Template Sequence		Q	D	V	I	Q	T	D	A	A	I	N	P	G	N	S	G	G	P	L	L	D	S	S	G	T	L	I	G	I	N	T	.	.	.	.	A	I	Y	S	P	S	G	A	S	S	.	.	G	V	G	F	S	I	P	V	D	T	V	G	G	I	V	D	Q	.	.	.	.	.	.	L	V	R	F	G	K	V	T	R	P
Template Known Secondary structure									S				T	T		T	T						T	T	S								.	.	.	.					S	S	S	S			.	.	S																	.	.	.	.	.	.					S	S
Template Predicted Secondary structure																																	.	.	.	.											.	.																		.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.					.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.							.	.	.	.	330	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.												.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	H	P	G	L	P	D	I	I	K	Q	P	D	S	E	S	Q	N	V	L	A	D	Y	I	I	A	T	P	I	R	D	G	E	Q	I	Y	G	L	R	L	N	P	R	K	G	L	N	A	F	T	T	S	L	L	Q	P	.	.	.	.	.	.	.	.	.	.	.	G	D	I	A	L	R	I	N	N	L	S	L
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	G	I	K	F	A	P	D	Q	S	V	E	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	S	G	V	L	V	L	D	A	P	P	S	G	P	A	G	K	A	G	L	Q	S	T	K	R	D	G	Y	G	R	L	V	L	G	D	I	I	T	S	V	N	G	T	K	V
Template Known Secondary structure										S	S	T	T	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			S								T	T	S					T	T								S	S	S												T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350																				.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	P	D	E	V	S	Q	A	L	S	L	L	L	T	Q	Q	S	A	Q	F	T	I	R	R	N	G	V	P	R	L	I	N	V	S	V	G	E	L	T	G	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	G	S	D	L	Y	R	I	L	D	Q	C	K	V	G	D	E	V	T	V	E	V	L	R	G	D	H	K	E	K	I	S	V	T	L	E	P	K	P	D	E
Template Known Secondary structure		S	S									T	T			T	T										S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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