Job Description P45757 Confidence 99.97% Date Wed Jan 25 15:20:55 GMT 2012 Rank 5 Aligned Residues 213 % Identity 15% Template c1lcyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:htra2 serine protease; PDBTitle: crystal structure of the mitochondrial serine protease htra2 Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		R	F	P	F	H	L	A	N	H	N	K	D	A	A	I	N	I	L	I	I	F	I	S	I	G	S	I	I	F	N	V	N	Y	F	H	T	T	I	V	K	N	G	Q	I	I	N	Q	P	T	N	A	F	Q	.	.	S	D	F	S	L	A	A	L	W	R	N	E	N	H	A	G	V	K	D	A	N	P	V	A	V
Query Conservation																																																							.	.
Alig confidence									.	.																																													.	.														.	.	.	.
Template Conservation									.	.																																																												.	.	.	.
Template Sequence		T	Y	E	A	V	V	T	.	.	A	V	D	P	V	A	D	I	A	T	L	R	I	Q	T	K	E	P	L	P	T	L	P	L	G	R	S	A	D	V	R	Q	G	E	F	V	V	A	M	G	S	P	F	A	L	Q	N	T	I	T	S	G	I	V	S	S	A	Q	R	.	.	.	.	P	N	V	E	Y	I	Q	T
Template Known Secondary structure									.	.				T	T	T	T									S	S							B			G	G	G			T	T									T	T	S	S	S	S							B		S		S		.	.	.	.
Template Predicted Secondary structure									.	.																																																												.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.
		83	.	.	.	.	.	.	90						.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.
Query SS confidence										.	.	.	.	.
Query Sequence		N	Q	E	T	P	K	L	S	.	.	.	.	.	I	A	L	N	G	I	V	L	T	S	N	D	E	T	S	F	V	L	I	N	E	G	S	E	Q	K	R	Y	S	L	N	E	A	L	E	S	A	P	G	T	F	I	R	K	I	N	K	T	S	V	V	F	E	T	H	G	H	Y	E	K	V	T	L	H	P	G	L
Query Conservation										.	.	.	.	.
Alig confidence										.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.														.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.														.	.	.
Template Sequence		D	A	A	I	D	F	G	N	A	G	G	P	L	V	N	L	D	G	E	V	I	G	V	N	T	.	.	.	.	.	.	.	.	.	.	.	M	K	V	T	A	G	I	S	F	A	I	P	S	D	R	L	R	E	F	L	H	R	.	.	.	.	.	.	R	Y	I	G	V	M	M	L	T	L	S	P	S	.	.	.
Template Known Secondary structure		S	S			S	T	T	T	T	T	S					T	T	S								.	.	.	.	.	.	.	.	.	.	.					T	T														T			.	.	.	.	.	.														.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.														.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.												190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.							.	.	.	.	.	.	.	.	220	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	I	I	K	Q	P	D	S	E	S	Q	N	V	L	A	D	Y	I	I	A	T	P	I	R	D	G	E	Q	I	Y	G	L	R	L	N	P	R	K	G	L	N	A	F	T	T	S	L	L	Q	P	G	D	I	A	L	R	I	N	N	L	S	L	T	H	P	D	E	V	S	Q	A	L	S	L	L	L	T	Q	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	A	E	L	Q	L	R	E	P	S	F	P	D	V	Q	H	G	V	L	I	H	K	V	I	L	G	S	P	A	H	R	A	G	L	R	P	G	D	V	I	L	A	I	G	E	Q	M	V	Q	N	A	E	D	V	Y	E	A	V	.	.	.	R	T	Q	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S		T	T	S				S	S									T	T	S						T			T	T							T	T					S									.	.	.	T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.
Template SS confidence
																240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.				.	300	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	Q	F	T	I	R	R	N	G	V	P	R	L	I	N	V	S	V	G	E	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	A	V	Q	I	R	R	G	R	E	T	L	T	L	Y	V	T	P	E	V	T	E
Template Known Secondary structure		S								T	T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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