Job Description P0A830 Confidence 100.00% Date Thu Jan 5 11:06:44 GMT 2012 Rank 1 Aligned Residues 382 % Identity 31% Template d2nwwa1 SCOP info Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein Resolution 3.20

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.							.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		Q	V	L	T	A	I	A	I	G	I	L	L	G	H	F	Y	P	.	.	.	.	.	.	E	I	G	E	Q	M	K	P	L	G	D	G	F	V	K	L	I	K	M	I	I	A	P	V	I	F	C	T	V	V	T	G	I	A	G	M	E	S	M	K	A	V	G	R	T	G	A	V	A	L	L	Y	F	E	I	V	S
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																							.
Template Conservation																																																															.
Template Sequence		K	I	L	I	G	L	I	L	G	A	I	V	G	L	I	L	G	H	Y	G	Y	A	H	A	V	H	T	Y	V	K	P	F	G	D	L	F	V	R	L	L	K	M	L	V	M	P	I	V	F	A	S	L	V	V	G	A	A	S	I	S	P	.	A	R	L	G	R	V	G	V	K	I	V	V	Y	Y	L	L	T	S
Template Known Secondary structure																			T	T	T	T					T	T	T	T																									T	T	T		S		T	T	.	T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	A	L	I	I	G	L	I	I	V	N	V	V	Q	P	G	A	G	M	N	V	D	P	A	T	L	D	A	K	A	V	A	V	Y	A	D	Q	A	K	D	Q	G	I	V	A	F	I	M	D	V	I	P	A	S	V	I	G	A	F	A	S	G	N	I	L	Q	V	L	L	F	A	V	L	F	G	F	A	L	H
Query Conservation
Alig confidence																									.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.
Template Sequence		A	F	A	V	T	L	G	I	I	M	A	R	L	F	N	P	G	A	G	I	H	L	A	.	.	.	.	.	.	.	V	G	G	Q	Q	F	Q	P	H	Q	A	P	P	L	V	H	I	L	L	D	I	V	P	T	N	P	F	G	A	L	A	N	G	Q	V	L	P	T	I	F	F	A	I	I	L	G	I	A	I	T
Template Known Secondary structure															S		S								.	.	.	.	.	.	.																			G	G	G	S		S								S
Template Predicted Secondary structure																									.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.								.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		166	.									.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.
Query Sequence		R	L	.	.	.	.	.	.	.	.	G	S	K	G	Q	L	I	F	N	V	I	E	S	F	S	Q	V	I	F	G	I	I	N	M	I	M	R	L	A	P	I	G	A	F	G	A	M	A	F	T	I	G	K	Y	G	V	G	T	L	V	Q	L	G	Q	L	I	I	C	F	Y	I	T	C	I	L	F	V	V	L	V
Query Conservation				.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	L	M	N	S	E	N	E	K	V	R	K	S	A	E	T	L	L	D	A	I	N	G	L	A	E	A	M	Y	K	I	V	N	G	V	M	Q	Y	A	P	I	G	V	F	A	L	I	A	Y	V	M	A	E	Q	G	V	H	V	V	G	E	L	A	K	V	T	A	A	V	Y	V	G	L	T	L	Q	I	L	L	V
Template Known Secondary structure				T	T		S		T	T																											T	T	S																T	G	G	G			T																				T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	S	I	A	K	A	T	G	F	S	I	F	K	F	I	R	Y	I	R	E	E	L	L	I	V	L	G	T	S	S	S	E	S	A	L	P	R	M	L	D	K	M	E	K	L	G	C	R	K	S	V	V	G	L	V	I	P	T	G	Y	S	F	N	L	D	G	T	S	I	Y	L	T	M	A	A	V	F	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	F	V	L	L	K	I	Y	G	I	D	P	I	S	F	I	K	H	A	K	D	A	M	L	T	A	F	V	T	R	S	S	S	G	T	L	P	V	T	M	R	V	A	K	E	M	G	I	S	E	G	I	Y	S	F	T	L	P	L	G	A	T	I	N	M	D	G	T	A	L	Y	Q	G	V	C	T	F	F	I	A
Template Known Secondary structure								T	T	T																							T	G	G	G										T	T	T			T	T	T					T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.							.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		Q	A	T	N	S	Q	M	D	I	V	H	Q	I	T	L	L	I	V	L	L	L	S	S	K	G	A	A	G	V	T	G	S	G	F	I	V	L	A	A	T	L	S	A	V	G	H	L	P	V	.	.	.	.	.	.	A	G	L	A	L	I	L	G	I	D	R	F	M	S	E	A	R	A	L	T	N	L	V	G	N
Query Conservation																																																			.	.	.	.	.	.
Alig confidence																																															.				.	.	.	.	.	.
Template Conservation																																															.
Template Sequence		N	A	L	G	S	H	L	T	V	G	Q	Q	L	T	I	V	L	T	A	V	L	A	S	I	G	T	A	G	V	P	G	A	G	A	I	M	L	A	M	V	L	H	S	V	G	.	L	P	L	T	D	P	N	V	A	A	A	Y	A	M	I	L	G	I	D	A	I	L	D	M	G	R	T	M	V	N	V	T	G	D
Template Known Secondary structure					T					S	S	T	T													T	T	S	S		T	T														T	.			T	T	S											G	G	G
Template Predicted Secondary structure																																															.
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	A	T	I	V	V	A	K	W	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	G	T	A	I	V	A	K	T	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions