Job Description P0AD68 Confidence 100.00% Date Thu Jan 5 11:20:08 GMT 2012 Rank 3 Aligned Residues 500 % Identity 23% Template c1pmdA_ PDB info PDB header:peptidoglycan synthesis Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme; PDBTitle: penicillin-binding protein 2x (pbp-2x) Resolution 3.50 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.									.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140
Predicted Secondary structure																																			.	.	.	.	.	.	.	.																																	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.																																	.	.
Query Sequence		R	G	M	I	T	D	R	S	G	R	P	L	A	V	S	V	P	V	K	A	I	W	A	D	P	K	E	V	H	D	A	G	G	.	.	.	.	.	.	.	.	I	S	V	G	D	R	W	K	A	L	A	N	A	L	N	I	P	L	D	Q	L	S	A	R	I	N	A	N	P	K	G	R	.	.	F	I	Y	L	A
Query Conservation																																			.	.	.	.	.	.	.	.																																	.	.
Alig confidence																																			.	.	.	.	.	.	.	.																																	.	.
Template Conservation
Template Sequence		R	G	T	I	Y	D	R	N	G	V	P	I	A	E	D	A	T	S	Y	N	V	Y	A	V	I	D	E	N	Y	K	S	A	T	G	K	I	L	Y	V	E	K	T	Q	F	N	K	V	A	E	V	F	H	K	Y	L	D	M	E	E	S	Y	V	R	E	Q	L	S	Q	P	N	L	K	Q	V	S	F	G	A	K	G
Template Known Secondary structure								T	T	S					B											B		S	S				T	T	T			S	S			S	T	T	T								T	T	T	T												S	S			S	B						S	S	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		141	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.																																									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																																									.	.	.	.	.	.	.	.
Query Sequence		R	Q	V	N	P	D	M	.	.	.	.	A	D	Y	I	K	K	L	K	L	P	G	I	H	L	R	E	E	S	R	R	Y	Y	P	S	G	E	V	T	A	H	L	I	G	F	T	N	V	D	S	Q	.	.	.	.	.	.	.	.	G	I	E	G	V	E	K	S	F	D	K	W	L	T	G	Q	P	G	E	R	I
Query Conservation									.	.	.	.																																									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	I	T	Y	A	N	M	M	S	I	K	K	E	L	E	A	A	E	V	K	G	I	D	F	T	T	S	P	N	R	S	Y	P	N	G	Q	F	A	S	S	F	I	G	L	A	Q	L	H	E	N	E	D	G	S	K	S	L	L	G	T	S	G	M	E	S	S	L	N	S	I	L	A	G	T	D	G	I	I	T
Template Known Secondary structure		S	S	B		T	T	T	T	T	T					S	S	T	T	S													B		S	S	S	S	S	S	T	T	T	S					B				S	S	S	S			B			T	T	S	G	G	G	S	T	T	S	S					S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		V	R	K	D	R	Y	G	R	V	I	.	.	E	D	I	S	S	T	D	S	Q	A	A	H	N	L	A	L	S	I	D	E	R	L	Q	A	L	V	Y	R	E	L	N	N	A	V	A	F	N	K	A	E	S	G	S	A	V	L	V	D	V	N	T	G	E	V	L	A	M	A	N	S	P	S	Y	N	P	N	N	L
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		Y	E	K	D	R	L	G	N	I	V	P	G	T	E	Q	V	S	Q	R	T	M	D	G	K	D	V	Y	T	T	I	S	S	P	L	Q	S	F	M	E	T	Q	M	D	A	F	Q	E	K	V	K	G	K	Y	M	T	A	T	L	V	S	A	K	T	G	E	I	L	A	T	T	Q	R	P	T	F	D	A	D	T	K
Template Known Secondary structure		T	T	T	T	S	T	T				S				T	T													S																				S												S	S	S		B							S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		287	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.							.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.																																																						.	.	.	.	.	.
Query SS confidence								.																																																						.	.	.	.	.	.
Query Sequence		S	G	T	P	K	E	.	A	M	R	N	R	T	I	T	D	V	F	E	P	G	S	T	V	K	P	M	V	V	M	T	A	L	Q	R	G	V	V	R	E	N	S	V	L	N	T	I	P	Y	R	I	N	G	H	E	I	K	D	V	A	.	.	.	.	.	.	R	Y	S	E	L	T	L	T	G	V	L	Q	K	S
Query Conservation								.																																																						.	.	.	.	.	.
Alig confidence								.																																																						.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	I	T	E	D	F	V	W	R	D	I	L	Y	Q	S	N	Y	E	P	G	S	T	M	K	V	M	M	L	A	A	A	I	D	N	N	T	F	P	G	G	E	V	F	N	S	S	E	L	K	I	A	D	A	T	I	R	D	W	D	V	N	E	G	L	T	G	G	R	M	M	T	F	S	Q	G	F	A	H	S
Template Known Secondary structure			S	S	S	S							T	T	T	S							S	T	T												T				S	S						S				T	T	T	S					G	G	G	G	T			S	S						S						T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	V	G	V	S	K	L	A	L	A	M	P	S	S	A	L	V	D	T	Y	S	R	F	G	L	G	K	A	T	N	L	G	L	V	G	E	R	S	G	L	Y	P	Q	K	Q	R	W	S	D	I	E	R	A	T	F	S	F	G	Y	G	L	M	V	T	P	L	Q	L	A	R	V	Y	A	T	I	G	S	Y	G
Query Conservation
Alig confidence																																													.	.	.
Template Conservation																																													.	.	.
Template Sequence		S	N	V	G	M	T	L	L	E	Q	K	M	G	D	A	T	W	L	D	Y	L	N	R	F	K	F	G	V	P	T	R	F	G	L	T	D	E	Y	A	G	Q	L	P	.	.	.	A	D	N	I	V	N	I	A	Q	S	S	F	G	Q	G	I	S	V	T	Q	T	Q	M	I	R	A	F	T	A	I	A	N	D	G
Template Known Secondary structure							T					T	T		T	T									T	T	T	T	S					S	S	S									.	.	.		S									T	T	T	S	S																T	T	T	T
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.				.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
			440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.											.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.									.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.								.
Query SS confidence		.																	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.								.
Query Sequence		.	I	Y	R	P	L	S	I	T	K	V	D	P	P	V	P	G	.	.	.	.	.	.	.	.	.	.	E	R	V	F	P	E	S	I	V	R	T	V	V	H	M	M	E	S	V	A	L	.	.	.	.	.	.	.	.	P	G	G	G	G	V	K	.	A	A	I	K	G	Y	R	I	A	I	K	T	G	T	A	K
Query Conservation		.																	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.								.
Alig confidence		.																	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.								.
Template Conservation
Template Sequence		V	M	L	E	P	K	F	I	S	A	I	Y	D	P	N	D	Q	T	A	R	K	S	Q	K	E	I	V	G	N	P	V	S	K	D	A	A	S	L	T	R	T	N	M	V	L	V	G	T	D	P	V	Y	G	T	M	Y	N	H	S	T	G	K	P	T	V	T	V	P	G	Q	N	V	A	L	K	S	G	T	A	Q
Template Known Secondary structure							B								S	S	S	S														S														T	T	S	S		S	S	S		S	S			S	S	S	S	S		S	S		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
		500	.	.	.	.	.	.					.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		K	V	G	P	D	G	R	.	.	.	.	Y	I	N	K	Y	I	A	Y	T	A	G	V	A	P	A	S	Q	P	R	F	A	L	V	V	V	I	N	D	P	Q	A	G	K	Y	Y	G	G	A	V	S	A	P	V	F	G	A	I	M	G	G	V	L	R	T	M	N	I	E	P	D	A	L	T	T	G	D	K	N	E
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																																.	.	.
Template Conservation																																												.	.	.
Template Sequence		I	A	D	E	K	N	G	G	Y	L	V	G	L	T	D	Y	I	F	S	A	V	S	M	S	P	A	E	N	P	D	F	I	L	Y	V	T	V	Q	Q	P	E	H	.	.	.	Y	S	G	I	Q	L	G	E	F	A	N	P	I	L	E	R	A	S	A	M	K	D	S	L	N	L	Q	T	T	A	K	A	L	E	Q
Template Known Secondary structure						S	S	S	S	S			S	T	T										S	S	S	S	S		S											S	S	.	.	.																				T	T	T	T	S	T	T	S	S	S	T	T	T	T	T	T
Template Predicted Secondary structure																																												.	.	.
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.				.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
		576
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		630