 |
Job Description | P76205 | Confidence | 49.42% | Date | Thu Jan 5 12:20:31 GMT 2012 |
Rank | 63 | Aligned Residues | 65 |
% Identity | 15% | Template | c3zrhA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:ubiquitin thioesterase zranb1; |
PDBTitle: crystal structure of the lys29, lys33-linkage-specific trabid otu2 deubiquitinase domain reveals an ankyrin-repeat ubiquitin binding3 domain (ankubd)
|
Resolution | 2.23 Å |
|
 |
  |   |
549 | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | |
|
|
|
. | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | A | M | S | K | G | N | E | D | V | V | L | S | Y | I | S | T | L | G | A | F | A | K | K | H | S | F | S | Q | H | Q | L | F | T | L | L | A | A | K | N | H | D | . |
. |
. |
. |
N | M | S | A | V | H | I | A | I | H | H | K | H | Y | K | T | V | E | T | Y | Y | A | A | I | N | A | I | S |
Query Conservation |   |
|
|
|   |
|
|
|   |
|
|
|   |   |
|
|
|   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|
|   |
| . | . | . | . |
|   |
|
|
|
|
|
|
|   |   |
|
|   |
|
|
|
|   |
|
|   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |   |   |
|   |
|
| . | . | . | . | . |   |   |
|   |   |   |
|
|
|   |   |   |
|
|   |
|   |
|
|
|
|
|
|
|
|
|   |
|   |
|   |
|   |   |
|
|   |   |
|   |   |   |   |
Template Sequence |   |
V | G | V | V | E | G | D | L | A | A | I | E | A | Y | K | S | S | G | G | D | I | A | R | Q | L | T | . |
. |
. |
. |
. |
A | D | E | V | R | L | L | N | R | P | S | A | F | D | V | G | Y | T | L | V | H | L | A | I | R | F | Q | R | Q | D | M | L | A | I | L | L | T | E | V | S | Q | Q | A |
Template Known Secondary structure |   |
 |  |  |  |  | T |
|  |  |  |  |  |  |  |  | T | T | T |
|
| T | T |
|
|
|
| . | . | . | . | . |  |  |  |  |  |  |  |
|
| T | T | T |
|
| T | T |
|
|  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
271 | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|