Job Description P76205 Confidence 99.91% Date Thu Jan 5 12:20:31 GMT 2012 Rank 24 Aligned Residues 161 % Identity 15% Template c3ui2A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle 43 kda protein, chloroplastic; PDBTitle: crystal structure of the cpsrp54 tail bound to cpsrp43 Resolution 3.18 Å

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		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	P	A	L	F	L	A	M	M	N	G	H	T	D	N	V	K	I	F	M	Q	E	I	Q	S	L	V	D	N	H	I	I	H	E	D	N	L	V	K	L	L	Q	T	K	S	A	N	E	T	P	G	L	Y	I	S	M	L	Y	G	F	D	E	I	I	D	I	F	L	N	A	L	T	T	P	I	A	Q	E	L
Query Conservation
Alig confidence																									.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation																									.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Sequence		Y	E	T	P	W	W	T	A	A	R	K	A	D	E	Q	A	L	S	Q	L	L	E	D	.	R	D	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	D	E	N	G	R	T	A	L	L	F	V	A	G	L	G	S	D	K	C	V	R	L	L	A	E	A	G	A	D	L	D	H	R	.	.
Template Known Secondary structure											T	T	T								T	T	T	T	.			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B		T	T	S		B									T											T	T			T	T			.	.
Template Predicted Secondary structure																									.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.																.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	K	K	L	V	M	S	I	L	A	M	K	I	H	D	G	E	P	G	L	Y	A	A	M	E	N	N	H	P	L	C	V	T	R	F	L	S	K	I	N	G	I	A	F	K	Y	K	L	S	K	A	N	I	M	D	L	L	K	G	A	T	A	Q	G	T	P	A	L	Y	I	A	M	S	K	G	N	E	D	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	M	R	G	G	L	T	A	L	H	M	A	A	G	Y	V	R	P	E	V	V	E	A	L	V	E	L	G	A	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	E	D	E	R	G	L	T	A	L	E	L	A	R	E	I	L	K	T	T	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.		S	S	S											T	T											T	T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220																.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	S	Y	I	S	T	L	G	A	F	A	K	K	H	S	F	S	Q	H	Q	L	F	T	L	L	A	A	K	N	H	D	N	M	S	A	V	H	I	A	I	H	H	K	H	Y	K	T	V	E	T	Y
Query Conservation
Alig confidence													.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.
Template Sequence		K	G	N	P	M	Q	F	G	R	R	I	.	.	.	.	.	.	G	L	E	K	V	I	N	V	L	E	G	Q	V	F	E	Y	A	E	V	D	E	I	V	E	K	R	G	K	G	K	D	V	E	Y	L
Template Known Secondary structure			S	S									.	.	.	.	.	.																											S		T	T	S
Template Predicted Secondary structure													.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.							.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions