Job Description P76205 Confidence 99.94% Date Thu Jan 5 12:20:31 GMT 2012 Rank 14 Aligned Residues 236 % Identity 14% Template c3jxiA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain Resolution 2.30 Å

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		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.				.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		S	A	M	L	L	I	M	A	T	G	Q	S	Q	Q	L	I	T	L	F	K	Q	L	P	I	L	P	E	K	E	I	I	E	I	I	T	A	Q	N	S	V	G	T	P	A	L	F	L	A	M	.	.	.	M	N	G	H	T	D	N	V	K	I	F	M	Q	E	I	Q	S	L	V	D	N	H	I	I	H	E	D	N
Query Conservation																																																			.	.	.
Alig confidence																											.																								.	.	.																			.	.	.	.
Template Conservation																											.																																													.	.	.	.
Template Sequence		P	I	L	F	D	I	V	S	R	G	S	P	D	G	L	E	G	L	L	S	F	L	L	T	H	.	K	K	R	L	T	D	E	E	F	R	E	P	S	T	G	K	T	C	L	P	K	A	L	L	N	L	S	A	G	R	N	D	T	I	P	I	L	L	D	I	A	E	K	T	.	.	.	.	G	N	M	R	E	F
Template Known Secondary structure											T		G	G	G	G	T	T									.	T			T	T	S	G	G	G	S		T	T	T										T	S		B	T	T	B		T												T	.	.	.	.	T
Template Predicted Secondary structure																											.																																													.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.		.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.					.	.	.	210	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	K	L	L	Q	T	K	S	A	N	E	T	P	G	L	Y	I	S	M	L	Y	G	F	D	E	I	I	D	I	F	L	N	A	L	T	T	P	I	A	Q	E	L	L	N	K	K	L	V	M	S	I	L	A	M	K	I	H	D	G	E	P	G	L	Y	A	A	M	E	N	N	H	P	L	C	V	T	R	F	L
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		I	N	S	P	F	R	D	V	Y	Y	R	G	Q	T	A	L	H	I	A	I	E	R	R	C	K	H	Y	V	E	L	L	V	E	K	G	A	D	V	H	A	Q	A	R	G	R	F	F	Q	P	.	K	D	E	G	G	Y	F	Y	F	G	E	L	P	L	S	L	A	A	C	T	N	Q	P	H	I	V	H	Y	L	T
Template Known Secondary structure			T			B			S	S			S	B									T	T											T	T			T	T									S	S	.	S					S			S		S	S								T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.					.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		S	K	I	N	G	I	A	F	K	Y	K	L	S	K	A	N	I	M	D	L	L	.	.	.	.	K	G	A	T	A	Q	G	T	P	A	L	Y	I	A	M	S	K	G	N	E	D	V	V	L	S	Y	I	S	T	L	G	A	F	A	K	K	H	S	F	S	Q	H	Q	L	F	T	L	L	A	A	K	N	H	D	N
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	G	H	K	Q	A	D	L	R	R	Q	D	S	R	G	N	T	V	L	H	A	L	V	A	I	A	D	N	T	R	E	N	T	K	F	V	T	K	M	Y	D	L	L	L	I	K	C	A	K	L	F	P	D	T	N	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	N	N	D	G
Template Known Secondary structure				S	S					T	T				T	T	S													S	S																							T	T			G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G				T	T	S
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.																350	.	.	.	.	.	.
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	A	V	H	I	A	I	H	H	K	H	Y	K	T	V	E	T	Y	Y	A	A	I	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	P	L	M	M	A	A	K	T	G	K	I	G	I	F	Q	H	I	I	R	R	E	I
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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