Job Description P76205 Confidence 99.90% Date Thu Jan 5 12:20:31 GMT 2012 Rank 26 Aligned Residues 188 % Identity 11% Template c2nyjA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of trpv1 Resolution 3.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.				.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		G	T	P	A	L	F	L	A	M	M	N	G	H	T	D	N	V	K	I	F	M	Q	E	I	Q	S	L	V	D	N	H	I	I	H	E	D	N	L	V	K	L	L	Q	T	K	S	A	N	E	T	P	G	L	Y	.	.	.	I	S	M	L	Y	G	F	D	E	I	I	D	I	F	L	N	A	L	T	T	P	I	A
Query Conservation																																																								.	.	.
Alig confidence																													.	.	.	.	.	.	.																					.	.	.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		D	R	R	S	I	F	D	A	V	A	Q	S	N	C	Q	E	L	E	S	L	L	P	F	L	Q	R	S	.	.	.	.	.	.	.	K	K	R	L	T	D	S	E	F	K	D	P	E	T	G	K	T	C	L	L	K	A	X	L	N	L	H	N	G	Q	N	D	T	I	A	L	L	L	D	V	A	R	K	T	D	S
Template Known Secondary structure													T		S	T	T	T	T	T									.	.	.	.	.	.	.				T	T	S	G	G	G	S		T	T	T													B	T	T	B													T	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	E	L	L	N	K	K	L	V	M	S	I	L	A	M	K	I	H	D	G	E	P	G	L	Y	A	A	M	E	N	N	H	P	L	C	V	T	R	F	L	S	K	I	N	G	I	A	F	K	Y	K	L	S	K	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		L	K	Q	F	V	N	A	S	Y	.	.	.	.	T	D	S	Y	Y	K	G	Q	T	A	L	H	I	A	I	E	R	R	N	X	T	L	V	T	L	L	V	E	N	G	A	D	V	Q	A	A	A	N	G	D	F	F	K	K	T	K	F	G	E	L	P	L	S	L	A	A	C	T	N	Q	L	A	I	V	K	F	L
Template Known Secondary structure		S					T		B		.	.	.	.		S	S	S	S		S		B								T	T										T	T	T			T	T					S	G	G	G	S	S						S								T	T
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
																							532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	M	D	L	L	K	G	A	T	A	Q	G	T	P	A	L	Y	I	A	M	S	K	G	N	E	D	V	V	L	S	Y	I	S	T	L	G	A	F	A	K	K	H	S	F	S	Q	H	Q	L	F	T	L	L	A	A	K	N	H	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	N	S	W	Q	P	A	D	I	S	A	R	D	S	V	G	N	T	V	L	H	A	L	V	E	V	A	D	N	T	V	D	N	T	K	F	V	T	S	X	Y	N	E	I	L	I	L	G	A	K	L	H	P	T	L	K	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	T	N	R	K
Template Known Secondary structure			T		S	S					T	T				T	T										T	T																									T		T	T			G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G				S	S
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.																.	.	.	330	.	.
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	M	S	A	V	H	I	A	I	H	H	K	H	Y	K	T	V	E	T	Y	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	T	P	L	A	L	A	A	S	S	G	K	I	G	V	L	A	Y	I	L	Q
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions