Job Description P76205 Confidence 99.93% Date Thu Jan 5 12:20:31 GMT 2012 Rank 18 Aligned Residues 162 % Identity 19% Template c2f8xK_ PDB info PDB header:transcription/dna Chain: K: PDB Molecule:neurogenic locus notch homolog protein 1; PDBTitle: crystal structure of activated notch, csl and maml on hes-12 promoter dna sequence Resolution 3.25 Å

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		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	L	F	L	A	M	M	N	G	H	T	D	N	V	K	I	F	M	Q	E	I	Q	S	L	V	D	N	H	I	I	H	E	D	N	L	V	K	L	L	Q	T	K	S	A	N	E	T	P	G	L	Y	I	S	M	L	Y	G	F	D	E	I	I	D	I	F	L	N	A	L	T	T	P	I	A	Q	E	L	L	N
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	P	L	M	I	A	S	C	S	A	V	I	S	D	F	I	Y	S	L	H	N	Q	T	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	E	T	A	L	H	L	A	A	R	Y	S	R	S	D	A	A	K	R	L	L	E	A	S	A	D	A	N	I	Q	D	N	M	G
Template Known Secondary structure																					S				S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											T	T											T	T			T	T				T	T	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1884	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.																					.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.
		481	.	.	.	.	.	.	.	.																																																					490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	L	V	M	S	I	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	K	I	H	D	G	E	P	G	L	Y	A	A	M	E	N	N	H	P
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	T	P	L	H	A	A	V	S	A	D	A	Q	G	V	F	Q	I	L	I	R	N	R	A	T	D	L	D	A	R	M	H	D	G	T	T	P	L	I	L	A	A	R	L	A	V	E	G	M	L	E	D	L	I	N	S	H	A	D	V	N	A	V	D	D	L	G	K	S	A	L	H	W	A	A	A	V	N	N	V
Template Known Secondary structure											T	T											S	S	S			T	T				T	T											T	T		T	T								T	T			S	S				T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		1963	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.	.	.	.	.	.	.	.	.	2000	.	.	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	V	T	R	F	L	S	K	I	N	G	I	A	F	K	Y	K	L	S	K	A	N	I	M	D	L	L	K	G	A	T	A	Q	G	T	P	A	L	Y	I	A	M	S	K	G	N	E	D	V	V	L	S	Y	I	S	T	L	G	A	F	A	K	K	H	S	F	S	Q	H	Q	L	F	T	L	L	A	A	K	N
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	A	V	V	L	L	K	N	G	A	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	M	Q	N	N	R	E	E	T	P	L	F	L	A	A	R	E	G	S	Y	E	T	A	K	V	L	L	D	H	F	A	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	T	D
Template Known Secondary structure										T	T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T				T	T												T											T	T			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2043	.	.	.	.	.	.	2050	.	.	.	.	.																.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.																.	2090	.	.
		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	N	M	S	A	V	H	I	A	I	H	H	K	H	Y	K	T	V	E	T	Y	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	M	D	R	L	P	R	D	I	A	Q	E	R	M	H	H	D	I	V	R	L	L	D	E
Template Known Secondary structure		T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		2093	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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