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Job DescriptionP76205
Confidence99.95%DateThu Jan 5 12:20:31 GMT 2012
Rank12Aligned Residues201
% Identity13%Templatec2f37B_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of human2 trpv2
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   395....400.........410.........420 .........430.........440.
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Query Sequence  QNSVGTPALFLAMMNGHTDNVKIFMQ. . . . . . . EIQSLVDNHIIHEDNLVKLLQ. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PNRFDRDRLFNAVSRGVPEDLAGLPEYLSKTSKYLTDSEYTEGSTGKTCLXKAVLNLKDGVNACILPLLQIDRDSGNPQP
Template Known Secondary structure 
S


T
GGGGTTT

TTSGGGSBTTTTB
T
BTTB
TTT
SS
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   71........80.........90.........100.........110.........120.........130.........140.........150
 
   442.......450.........460.........470.........480.........490.........500.........510....
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Query Sequence  . . . . . . . TKSANETPGLYISMLYGFDEIIDIFLNALTTPIAQELLNKKLVMSILAMKIHDGEPGLYAAMENNHPLCVTRF
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Template Sequence  LVNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFY. . FGELPLSLAACTKQWDVVSYL
Template Known Secondary structure  GGG
B

STTTTT
BTT
TT

TT



SGGG
TTSSSS

..S
SSTT
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   151........160.........170.........180.........190.........200....... ..210.........220........
 
   515....520.........530...... ...540.........550.........560.........570.........580.........590
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Query Sequence  LSKINGIAFKYKLSKANIMDLL. . . . KGATAQGTPALYIAMSKGNEDVVLSYISTLGAFAKKHSFSQHQLFTLLAAKNHD
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Template Sequence  LENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLE. . . . . . . . . . . . . . . DIRNLQ
Template Known Secondary structure 
SS



TT


TTS



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STT

GG...............G


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   229230.........240.........250.........260.........270.........280....... ..290...
 
   591........600.........610..
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Query Sequence  NMSAVHIAIHHKHYKTVETYYA
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Template Sequence  DLTPLKLAAKEGKIEIFRHILQ
Template Known Secondary structure  S

TT
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   294.....300.........310.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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