Job Description P45537 Confidence 9.15% Date Thu Jan 5 12:02:58 GMT 2012 Rank 21 Aligned Residues 142 % Identity 14% Template c3pltB_ PDB info PDB header:structural protein Chain: B: PDB Molecule:sphingolipid long chain base-responsive protein lsp1; PDBTitle: crystal structure of lsp1 from saccharomyces cerevisiae Resolution 2.90 Å

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		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	Q	S	G	L	L	R	K	N	A	H	D	A	L	E	A	Y	Q	E	A	I	R	L	I	L	S	E	D	P	Q	P	T	P	L	A	W	Q	R	M	R	V	N	Q	A	H	N	T	L	Y	N	S	L	N	Q	A	M	Q	E	P	A	F	N	S	H	Y	L	A	D	M	K	L	W	V	T	H	S	Q	F	I	V
Query Conservation
Alig confidence																																																					.	.	.	.	.	.						.
Template Conservation																																																					.	.	.	.	.	.						.
Template Sequence		Y	E	L	G	E	L	Q	D	Q	F	I	D	K	Y	D	Q	Y	R	V	T	L	K	S	I	R	N	I	E	A	S	V	Q	P	S	R	D	R	K	E	K	I	T	D	E	I	A	H	L	K	Y	K	.	.	.	.	.	.	D	P	Q	S	T	.	K	I	P	V	L	E	Q	E	L	V	R	A	E	A	E	S	L
Template Known Secondary structure																																																		T	T	S	.	.	.	.	.	.				T	T	.	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.						.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.							160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.				.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		E	H	I	N	A	M	T	T	L	A	R	E	H	R	A	L	P	P	E	L	A	Q	E	Y	L	Q	S	C	E	I	.	.	.	A	I	Q	R	C	Q	Q	R	L	E	Y	D	E	P	G	S	S	G	D	A	N	I	M	D	A	P	E	M	Q	P	H	E	G	A	A	G	T	L	E	Q
Query Conservation																																.	.	.
Alig confidence																																.	.	.																												.
Template Conservation																																																														.
Template Sequence		V	A	E	A	Q	L	S	N	I	T	R	E	K	L	K	A	A	Y	S	Y	M	F	D	S	L	R	E	L	S	E	K	F	A	L	I	A	G	Y	G	K	A	L	L	E	L	L	D	D	S	P	P	A	Y	D	G	Y	E	A	S	R	.	Q	I	I	M	D	A	E	S	A	L	E	S
Template Known Secondary structure																																													T	T	S															.												T
Template Predicted Secondary structure																																																														.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions