Job Description P45537 Confidence 8.59% Date Thu Jan 5 12:02:58 GMT 2012 Rank 23 Aligned Residues 141 % Identity 11% Template c2jagA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:halorhodopsin; PDBTitle: l1-intermediate of halorhodopsin t203v Resolution 1.93 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.																											.	.	90	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	L	L	F	S	L	V	P	A	C	C	N	I	A	G	L	D	T	P	H	K	R	F	F	K	R	L	I	I	G	A	S	L	F	A	T	C	S	L	L	T	Q	L	L	L	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	P	L	P	F
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	L	A	G	I	A	I	L	V	F	V	Y	M	G	R	T	I	R	P	G	R	P	R	L	I	W	G	A	T	L	M	I	P	L	V	S	I	S	S	Y	L	G	L	L	S	G	L	T	V	G	M	I	E	M	P	A	G	H	A	L	A	G	E	M	V	R	S	Q	W	G	R	Y	L	T	W	A	L	S	T
Template Known Secondary structure																T	T	T			T	T																										T	T	T								T	T	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	G	L	T	L	V	L	G	V	T	A	E	L	G	P	L	H	A	K	L	L	P	A	S	L	L	A	A	I	F	T	L	S	L	A	G	Y	M	P	V	W	E	P	L	L	I	Y	A	L	G	T	L	W	Y	G	L	F	N	W	F	W	F	W	I	W	R	E	Q	P	L	R	E	S	L	S	L	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	M	I	L	L	A	L	G	L	L	A	D	V	D	L	G	S	L	F	T	V	I	A	A	D	I	G	M	C	V	T	G	L	A	A	A	M	T	T	S	A	L	L	F	R	W	A	F	Y	A	I	S	C	A	F	F	V	V	V	L	S	A	L	V	T	D	W	A	A	S	A	S	S	A	G	T	A	E	I	F
Template Known Secondary structure												T	T																												S																									T									T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		174	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	L	A	D	Y	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	L	R	V	L	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions