|   |
39 | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | V | F | H | P | V | R | A | K | Q | G | M | V | A | S | V | D | A | T | A | T | Q | V | G | V | D | I | L | K | E | G | G | N | A | V | D | A | A | V | A | V | G | Y | A | L | A | V | T | H | P | Q | A | G | N | L | G | G | G | G | F | M | L | I | R | S | K | N | G | N | T | T | A | I | D | F | R | E | M | A | P |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |   |   |   |
|
|   |
|
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |
|
|   |
|   |   |
|
|
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   |   |
|   |
|
|
|   |   |   |   |
|
|   |
|
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|   |   |   |   |
|   |
|
|   |
|   |   |   |
|
|
|
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|
|
Template Sequence |   |
R | S | R | P | N | A | L | S | Q | R | S | V | I | A | S | S | S | E | L | A | S | L | A | G | R | D | I | L | K | R | G | G | N | I | F | D | A | A | L | A | V | S | A | X | L | C | V | T | Q | N | N | L | C | G | L | G | G | D | L | F | A | L | I | R | D | E | N | G | Q | I | X | D | L | N | G | S | G | Q | A | S |
Template Known Secondary structure |   |
| S | S |
|
|  |  |  | S | S |  |  |  |  |  | S | B |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | T | T | S |
|
| T | T | S |  |  |  |  |  |  |  |
| T | T |
|
|  |  |  |  |  |  |
|
|
| B |
|
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
119 | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | K | A | T | R | D | M | F | L | D | D | Q | G | N | P | D | S | K | K | S | L | T | S | H | L | A | S | G | T | P | G | T | V | A | G | F | S | L | A | L | D | K | Y | G | T | M | P | L | N | K | V | V | Q | P | A | F | K | L | A | R | D | G | F | I | V | N | D | A | L | A | D | D | L | K | T | Y | G | S | E | V |
Query Conservation |   |
  |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|
|   |   |   |
|
|   |   |
|   |   |   |   |
|   |
|   |
|   |   |
|
|   |
|
|
|   |
|
|   |   |
|
|   |
|   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |
|
|   |
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|
|
|   |
|
|
|   |
|
|   |   |
|
|   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   | . |
Template Sequence |   |
R | A | V | S | I | D | Y | Y | E | S | X | G | L | T | K | I | P | E | R | G | . |
. |
P | Y | A | A | I | T | V | P | G | I | A | G | S | W | D | E | I | F | R | K | F | A | T | X | D | I | A | D | I | L | E | P | A | I | R | T | A | S | A | G | F | P | I | T | Q | N | Y | S | D | S | I | A | R | S | A | P | V | . |
Template Known Secondary structure |   |
T | T |
|
|  |  |  |  |  | T | T | T |
| S | S |
|
| S | S | S | . | . | T | T | T |
|
| B |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | |
|
. | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | |
  |
  |   |
199 | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | P | N | H | E | N | S | K | A | I | F | W | K | E | G | E | P | L | K | K | G | D | T | L | V | Q | A | N | L | A | K | S | L | E | M | I | A | E | N | G | P | D | E | F | Y | K | G | T | I | A | E | Q | I | A | Q | E | M | Q | K | N | G | G | L | I | T | K | E | D | L | A | A | Y | K | A | V | E | R | T | P | I |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|   |
|   |   |
|   |
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |
|
|   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|
|   |
|   |   |
|   |
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |
|
|   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |
|
|
Template Sequence |   |
I | G | Q | Y | R | G | W | S | S | I | F | X | P | N | G | S | V | P | V | A | G | E | I | L | K | Q | P | D | L | A | E | S | F | R | L | X | S | E | E | G | F | R | S | F | Y | D | G | S | L | A | D | I | I | I | A | G | L | E | G | T | G | S | P | L | S | D | R | D | L | R | V | Y | R | P | L | I | G | K | P | V |
Template Known Secondary structure |   |
 | T | T |
|  |  |  |  |  |  |  | S | T | T | S | S |
|
|
| T | T |
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |  |  |  |  | S |  |  |  |  |  |  |  |  | T | T | T | T | T |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |
Template Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . |
  |
  |   |
279 | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | G | D | Y | R | G | Y | Q | V | Y | S | M | P | P | P | S | S | G | G | I | H | I | V | Q | I | L | N | I | L | E | N | F | D | M | K | K | Y | G | F | G | S | A | D | A | M | Q | I | M | A | E | A | E | K | Y | A | Y | A | D | R | S | E | Y | L | G | D | P | D | F | V | K | V | P | W | Q | A | L | T | N | K | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |
|   |
|   |   |   |
|   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |
|
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|   |
|   |   | . |   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|   | . |   |   |   |
|
|   |   |   |   |   |   | . | . | . | . | . | . | . | . |
Template Sequence |   |
F | T | D | L | D | E | F | R | I | Y | E | T | S | P | N | S | Q | G | I | T | . |
V | I | E | W | I | R | G | X | E | S | H | G | Y | D | S | R | T | X | W | E | A | . |
K | I | E | D | I | F | E | T | X | E | E | A | Y | D | K | R | R | . |
K | I | T | D | P | S | Y | X | N | G | L | . |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  | T | T |  |  |  |  |  |
|
| T | T | B | T | T |  |  | . |  |  |  |  |  |  |  |  |  |  | T | T |
|
| T | T | T | G | G | G |
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |
|
|
| G | G | G | T |
|
|
| . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | |
260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | |
. | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | |
. | . | 300 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
  |
  |   |
359 | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | A | K | S | I | A | D | Q | I | D | I | N | K | A | K | P | S | S | E | I | R | P | G | K | L | A | P | Y | E | S | N | Q | T | T | H | Y | S | V | V | D | K | D | G | N | A | V | A | V | T | Y | T | L | N | T | T | F | G | T | G | I | V | A | G | E | S | G | I | L | L | N | N | Q | M | D | D | F | S | A | K | P |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
|   |   |
|
|
|
|
|   |
|   |
|
|   |   |   |
|
|
|
|   |   |   |
|   |
|
|
|   |
|
|
|   |
|   |
|
|
|   |   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
|   |   |
|
|
|
|
|   |
|   |
|
|   |   |   |
|
|
|
|   |   |   |   |   |
|
|
|   |
|
|
|   |   |   |   |
|   |   |   |   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | K | R | D | H | N | D | I | G | D | T | T | Y | F | S | I | S | D | S | E | G | R | S | V | S | I | I | Q | S | N | Y | X | G | F | G | S | G | I | V | P | K | G | T | G | F | V | L | Q | N | R | G | S | Y | F | T | L | Q | R |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
| B |
|
| S |
|
|
|
|  |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  | S | T | T |
| S | S |
|
|
| T | T | S |
|
|
|
|
|
| G | G | G | G | S | B |
|
| T |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
321 | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . |
  |
  |   |
439 | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | V | P | N | V | Y | G | L | V | G | G | D | A | N | A | V | G | P | N | K | R | P | L | S | S | M | S | P | T | I | V | V | K | D | G | K | T | W | L | V | T | G | S | P | G | G | S | R | I | I | T | T | V | L | Q | M | V | V | N | S | I | D | Y | G | L | N | V | A | E | A | T | N | A | P | R | F | H | H | Q | W |
Query Conservation |   |
  |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|   |
|
|   |   |
|   |   |   |   |   |
|
|
|   |
|   |
|   |   |
|   |   |   |   |   |
|
|   |
|
|
|   |
|   |   |   |
Alig confidence |   |
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   | . | . | . | . | . | . | . | . | . | . |
|   |   |   |
|
|
|
|
|   |
|
|
|   |
|   |
|
|   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|   |   |
|   |   |   |   |   |
|   |
|   |   |   |
|   |   |
|   |   |   |   |   |
|
|   |
|
|
|   |   |   |   |   |
Template Sequence |   |
D | H | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | A | L | X | P | G | K | R | T | F | H | T | L | A | A | C | X | V | E | K | E | H | D | L | Y | A | S | L | G | S | X | G | G | D | I | Q | P | Q | V | Q | X | Q | I | L | X | E | I | L | K | D | N | T | D | P | Q | A | I | L | D | K | P | R | W | T | E | P | Y |
Template Known Secondary structure |   |
T | S | T | . | . | . | . | . | . | . | . | . | . | T | B |
|
| T | T |
|
|
|
| B |
|
|
|
|  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |
|
| S | T | T |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |
|  |  |  |  |  |  | S |
|
|  |  |
|
|
|
Template Predicted Secondary structure |   |
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
379 | 380 | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . |
  |
  |   |
519 | |
|
|
|
520 | . | . | . | . | . | . | . | |
. | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | |
. | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 |
Predicted Secondary structure |   |
| . | . | . | . |
|
|  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
| . |
. |
. |
. |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | . |
. |
. |
. |
P | D | E | L | R | V | E | K | . |
G | F | S | P | D | T | L | K | L | L | E | A | K | G | Q | K | V | A | L | K | E | . |
A | M | G | S | T | Q | S | I | M | V | G | P | D | G | E | L | Y | G | A | S | D | P | R | S | V | D | D | L | T | A | G | Y |
Query Conservation |   |
  | . | . | . | . |   |   |   |
|   |   |
|   | . |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   | . |   |   |
|   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|
|   |
|
|   |
|   |
|
|
Alig confidence |   |
| . | . | . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
| . |   |
|   |
|   |
|   |
Template Sequence |   |
T | I | Y | E | A | P | G | A | V | Y | V | E | S | E | E | L | Y | R | N | V | S | K | Q | I | S | G | R | K | V | V | L | R | D | V | S | Q | E | F | G | T | A | Q | I | T | T | L | I | R | G | D | V | V | V | G | A | A | D | P | R | G | . |
D | G | I | A | I | P | Y |
Template Known Secondary structure |   |
| T | T | S | B |
|
|
|  |  |  | S | S |  |  |  |  |  |  |  |  |  |  | S |
| S |
|
|  |  |  |
|
| S | S | G | G | G |
|
|  |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  |
| T | T | T | . | B |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
| . |
|
|  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
449 | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | |
. | 510 | . | . | . | . | . |
  |