Job Description P18956 Confidence 100.00% Date Thu Jan 5 11:37:12 GMT 2012 Rank 6 Aligned Residues 345 % Identity 49% Template c2qm6C_ PDB info PDB header:transferase Chain: C: PDB Molecule:gamma-glutamyltranspeptidase; PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase2 in complex with glutamate Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Q	G	M	V	A	S	V	D	A	T	A	T	Q	V	G	V	D	I	L	K	E	G	G	N	A	V	D	A	A	V	A	V	G	Y	A	L	A	V	T	H	P	Q	A	G	N	L	G	G	G	G	F	M	L	I	R	S	K	N	G	N	T	T	A	I	D	F	R	E	M	A	P	A	K	A	T	R	D	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	V	G	L	A	L	S	S	H	P	L	A	S	E	I	G	Q	K	V	L	E	E	G	G	N	A	I	D	A	A	V	A	I	G	F	A	L	A	V	V	H	P	A	A	G	N	I	G	G	G	G	F	A	V	I	H	L	A	N	G	E	N	V	A	L	D	F	R	E	K	A	P	L	K	A	T	K	N	M
Template Known Secondary structure		S	S	S						S	S													T	T																			T	T	T			S	S	S									T	T	S										B			T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	D	D	Q	G	N	P	D	S	K	K	S	L	T	S	H	L	A	S	G	T	P	G	T	V	A	G	F	S	L	A	L	D	K	Y	G	T	M	P	L	N	K	V	V	Q	P	A	F	K	L	A	R	D	G	F	I	V	N	D	A	L	A	D	D	L	K	T	Y	G	S	E	V	L	P	N	H	E	N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	D	K	Q	G	N	V	V	P	K	L	S	E	D	G	Y	L	A	A	G	V	P	G	T	V	A	G	M	E	A	M	L	K	K	Y	G	T	K	K	L	S	Q	L	I	D	P	A	I	K	L	A	E	N	G	Y	A	I	S	Q	R	Q	A	E	T	L	K	E	A	R	E	R	F	L	K	Y	S	S	S	K
Template Known Secondary structure		T	B		T	T	S		B		T	T	T	T	T	S	S	G	G	G			B																	S						T																								T					T	T
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	I	F	W	K	E	G	E	P	L	K	K	G	D	T	L	V	Q	A	N	L	A	K	S	L	E	M	I	A	E	N	G	P	D	E	F	Y	K	G	T	I	A	E	Q	I	A	Q	E	M	Q	K	N	G	G	L	I	T	K	E	D	L	A	A	Y	K	A	V	E	R	T	P	I	S	G	D	Y	R	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y	F	F	K	K	G	H	L	D	Y	Q	E	G	D	L	F	V	Q	K	D	L	A	K	T	L	N	Q	I	K	T	L	G	A	K	G	F	Y	Q	G	Q	V	A	E	L	I	E	K	D	M	K	K	N	G	G	I	I	T	K	E	D	L	A	S	Y	N	V	K	W	R	K	P	V	V	G	S	Y	R	G	Y
Template Known Secondary structure					S	B	G	G	G	B				T	T																			T	T					S														T	T																								T	T
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	Y	S	M	P	P	P	S	S	G	G	I	H	I	V	Q	I	L	N	I	L	E	N	F	D	M	K	K	Y	G	F	G	S	A	D	A	M	Q	I	M	A	E	A	E	K	Y	A	Y	A	D	R	S	E	Y	L	G	D	P	D	F	V	K	V	P	W	Q	A	L	T	N	K	A	Y	A	K	S	I	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	I	S	M	S	P	P	S	S	G	G	T	H	L	I	Q	I	L	N	V	M	E	N	A	D	L	S	A	L	G	Y	G	A	S	K	N	I	H	I	A	A	E	A	M	R	Q	A	Y	A	D	R	S	V	Y	M	G	D	A	D	F	V	S	V	P	V	D	K	L	I	N	K	A	Y	A	K	K	I	F	D
Template Known Secondary structure								T	T		S														T	S		G	G	G	T		T	T																								S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	D	I	N	K	A	K	P	S	S	E	I	R	P	G	K	L	A	P	Y	E	S	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	I	Q	P	D	T	V	T	P	S	S	Q	I	K	P	G	M	G	Q	L	H	E	G	S	N
Template Known Secondary structure					T	T					G	G	G			T	T	T	T		S			T	T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions