|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | T | L | I | A | R | H | K | A | G | E | H | I | G | I | C | S | V | C | S | A | H | P | L | V | I | E | A | A | L | A | F | D | R | N | S | T | R | K | V | L | I | E | A | T | S | N | Q | V | N | Q | F | G | G | Y | T | G | M | T | P | A | D | F | R | E | F | V | F | T | I | A | D | K | V | G | F | A | R | E |
Query Conservation |   |
  |
|   |   |   |   |   |   |
|   |
|   |   |   |
|
|   |
|
|
|
|
|   |
|   |
|
|   |
|
|
|   |   |
|   |
|   |   |   |
|
|
|
|
|
|
|   |
|
|
|
|   |   |
|
|
|
|
|
|
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
Template Conservation |   |
  |   |   |
|
|   |   |
|   |   |   | . |   |   |
|
|
|
|
|
|
|   |   |   |   |
|   |
|
|
|
|   |   |   |   | . | . |
|   |   |
|
|
|
|
|
|
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|
|   |   |   |   |   | . | . |
Template Sequence |   |
M | E | W | L | V | E | V | T | Q | E | V | . |
S | N | L | T | L | C | L | D | S | T | N | I | K | A | I | E | A | G | L | K | K | C | K | . |
. |
N | R | A | M | I | N | S | T | N | A | E | R | E | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | E | K | L | F | P | L | A | V | E | H | G | A | A | . |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T | . |
|
| S |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |
| S | . | . | S |
|  |  |  |  |  |  |
| S |
|  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T | T |
|  | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
57 | . | . | 60 | . | . | . | . | . | . | . | |
. | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | |
|
. | . | . | . | . | . | . | . | . | 100 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |
|
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |
|
. | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | I | I | L | G | G | D | H | L | G | P | N | C | W | Q | Q | E | N | A | D | A | A | M | E | K | S | V | E | L | V | K | E | Y | V | R | A | G | F | . |
. |
S | K | I | H | L | D | A | S | M | S | C | A | G | D | P |
Query Conservation |   |
  |
|   |
|
|
|
|
|
|
|
|   |   |
|   |   |
|   |   |   |   |
|
|   |   |
|
|   |
|
|   |   |   |
|   |
|
|
| . | . |   |   |
|
|
|
|   |
|
|   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |   |   |   |   |
| . | . | . | . |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |
|
|
|
|
|
|
|   |   |   |   |   |   |
Template Sequence |   |
L | I | G | L | T | M | N | K | T | G | . |
. |
. |
. |
I | P | K | D | S | D | T | R | L | A | F | A | M | E | L | V | A | A | A | D | E | F | G | L | P | M | E | D | L | Y | I | D | P | L | I | L | P | A | N | V | A |
Template Known Secondary structure |   |
 |  |  |  | S |
|
| S | S |
| . | . | . | . | S |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| G | G | G |  |  |  |  |
|
|
|
|
| T | T | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
| . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
119 | 120 | . | . | . | . | . | . | . | . | |
|
|
|
. | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . |
  |