Job Description P0C8J8 Confidence 67.20% Date Thu Jan 5 11:30:06 GMT 2012 Rank 45 Aligned Residues 128 % Identity 11% Template c3l5aA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus Resolution 1.65 Å

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		42	.	.	.	.	.	.	.	50	.	.	.					.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure														.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	E	A	T	S	N	Q	V	N	Q	F	.	.	.	.	G	G	Y	T	G	M	T	P	A	D	F	R	E	F	V	F	T	I	A	D	K	V	G	F	A	R	E	R	I	I	L	G	G	D	H	L	G	P	N	C	W	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation														.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	Q	V	T	G	A	A	Y	I	E	P	Y	G	K	L	F	E	Y	G	F	N	I	D	H	D	A	C	I	P	G	L	T	N	X	A	S	T	X	K	Q	H	G	S	L	A	I	I	Q	L	A	H	A	G	R	F	S	N	Q	A	I	L	N	F	G	K	V	Y	G	P	S	P	X	T	L	H	S	P	I	E	H
Template Known Secondary structure										S	S	G	G	G			S	T	T					S	S	G	G	G													T	T	S											G	G	G									S					S	S						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
								96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																		.	.	.	.	.	.	.											.	.	.
Query SS confidence		.	.	.	.	.	.																																		.	.	.	.	.	.	.											.	.	.
Query Sequence		.	.	.	.	.	.	Q	E	N	A	D	A	A	M	E	K	S	V	E	L	V	K	E	Y	V	R	A	G	F	S	K	I	H	L	D	A	S	M	S	.	.	.	.	.	.	.	C	A	G	D	P	I	P	L	A	P	.	.	.	E	T	V	A	E	R	A	A	V	L	C	F	A	A	E	S	V	A	T	D	C
Query Conservation		.	.	.	.	.	.																																		.	.	.	.	.	.	.											.	.	.
Alig confidence		.	.	.	.	.	.																																		.	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		V	V	I	A	X	S	H	E	K	I	N	S	I	I	Q	Q	Y	R	D	A	T	L	R	A	I	K	A	G	F	D	G	V	E	I	S	I	A	Q	R	L	L	I	Q	T	F	F	S	T	F	S	N	R	R	T	D	H	Y	G	A	D	S	L	K	N	R	A	R	L	C	L	E	V	X	R	A	V	Q	E	V	I
Template Known Secondary structure																												T	T		S								T	T	S								T	T	T					S	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		160		.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		Q	.	R	E	Q	L	S	Y	V	I	G
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		D	K	E	A	P	D	N	F	I	L	G
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions